Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P20
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   0.76 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   2.3  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.4  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 216 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 97
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 88  VCLTQRSVFSTWAKRERQWMTSH 156
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 88  VCLTQRSVFSTWAKRERQWMTSHYACT 168
           +CLT+R +   +  R  +W   +   T
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKENARAT 71


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 294 RGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQNS 193
           RG   S  G  +YR++  G      G+LP P+ +
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKT 210


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 294 RGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQNS 193
           RG   S  G  +YR++  G      G+LP P+ +
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKT 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,813
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)