Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P19
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    28   2.8  
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    27   4.9  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    27   4.9  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    27   4.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    27   6.5  
U28730-4|AAO38621.1|  228|Caenorhabditis elegans Hypothetical pr...    27   6.5  
DQ340628-1|ABC65816.1|  228|Caenorhabditis elegans chondroitin p...    27   6.5  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    27   6.5  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    27   6.5  
AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 184 SHGLQGASTHHGTEGPTARVAAHRGGSIRESVSGPIRPAGP 306
           SHGL G S   G +GP+       G S  +   GP  PAGP
Sbjct: 201 SHGLPGPSGAPGPQGPSG-APGQPGQSGGQGQQGPAGPAGP 240


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
            F21G4.2 protein.
          Length = 1573

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 38   LRRRRVTCASHGDLPRVSPLASHAHATAVGLVSNLKKEFEARSESETGR-RMDS 196
            + RRR++ ++H    R+S   SH H  ++   S   ++       ETGR +MD+
Sbjct: 947  INRRRISTSTHKQRRRLSTTKSHTH--SITSASTQTRQLTGTERVETGRVKMDT 998


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
            protein F21G4.2 protein.
          Length = 1573

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 38   LRRRRVTCASHGDLPRVSPLASHAHATAVGLVSNLKKEFEARSESETGR-RMDS 196
            + RRR++ ++H    R+S   SH H  ++   S   ++       ETGR +MD+
Sbjct: 947  INRRRISTSTHKQRRRLSTTKSHTH--SITSASTQTRQLTGTERVETGRVKMDT 998


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 261 SSPVGGDAGGRSLCSVVGGRTLESMRRPVSLSERASNSFFK 139
           + P+  D  GR+  S+  G TL  +RR    S R    FF+
Sbjct: 88  ADPMSADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFR 128


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 261 SSPVGGDAGGRSLCSVVGGRTLESMRRPVSLSERASNSFFK 139
           + P+  D  GR+  S+  G TL  +RR    S R    FF+
Sbjct: 88  ADPMSADKLGRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFR 128


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
            protein F10G7.10c protein.
          Length = 1824

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 161  RSESETGRRMDSRVRPPTTEQRDRPPASPP-TGEDL 265
            R +SET RR  S+ R  T E +D    +PP  G DL
Sbjct: 1363 RLQSETRRRFFSKRRQATFENQDIVKVNPPLVGTDL 1398


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
            protein F10G7.10a protein.
          Length = 2025

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 161  RSESETGRRMDSRVRPPTTEQRDRPPASPP-TGEDL 265
            R +SET RR  S+ R  T E +D    +PP  G DL
Sbjct: 1363 RLQSETRRRFFSKRRQATFENQDIVKVNPPLVGTDL 1398


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
            protein F10G7.10b protein.
          Length = 1884

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 161  RSESETGRRMDSRVRPPTTEQRDRPPASPP-TGEDL 265
            R +SET RR  S+ R  T E +D    +PP  G DL
Sbjct: 1363 RLQSETRRRFFSKRRQATFENQDIVKVNPPLVGTDL 1398


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 175 NGTSHGLQGASTHHGTEGPTARVAAHRG 258
           +GT HG   +  HHG  G      AH G
Sbjct: 673 HGTHHGAHHSPAHHGHHGAHHEHGAHHG 700


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 62  ASHGDLPRVSPLASHAHATAVGLVSNLKKEFE 157
           A + DLPR SP+ + + A ++    +LK E E
Sbjct: 281 AMYQDLPRYSPIVTSSSAQSIHQEESLKMEIE 312


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = -3

Query: 395 SACTSSTSIRANSSLCSIRNSTRNSVRVSTGPAGRIGPLTLSRIDPPRWAATRAVGPSVP 216
           S+  SS  ++  S L S+ +  +++  V   P   +    LS+  P RW   R V  +  
Sbjct: 753 SSTASSAILQVVSKLSSVASLDKSAAAVDKKPTKTV----LSQGTPYRWKEWRIVRGTTS 808

Query: 215 WWVDAPWSPCDVPFHSQNALRILFSN 138
            ++ +     ++PF S    R L  N
Sbjct: 809 LFIWSDVLLIELPFQSNGWFRYLADN 834


>U28730-4|AAO38621.1|  228|Caenorhabditis elegans Hypothetical
           protein K10B2.3a protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 257 PRWAATRAVGPSVPWWVDAPWSP 189
           PRW    AV PS   W+  P+SP
Sbjct: 155 PRWQTEGAVNPSKINWLIKPYSP 177


>DQ340628-1|ABC65816.1|  228|Caenorhabditis elegans chondroitin
           proteoglycan-6 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 257 PRWAATRAVGPSVPWWVDAPWSP 189
           PRW    AV PS   W+  P+SP
Sbjct: 155 PRWQTEGAVNPSKINWLIKPYSP 177


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 196 QGASTHHGTEGPTARVAAHRGGSIRESVSGPIRPAGPVET 315
           + +S+ + +E PT+    HR  SI  S S  IRP+ P  T
Sbjct: 131 KSSSSRYSSETPTSHHHHHRSNSISHS-SDVIRPSQPKAT 169


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 196 QGASTHHGTEGPTARVAAHRGGSIRESVSGPIRPAGPVET 315
           + +S+ + +E PT+    HR  SI  S S  IRP+ P  T
Sbjct: 491 KSSSSRYSSETPTSHHHHHRSNSISHS-SDVIRPSQPKAT 529


>AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical
           protein F49F1.9 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 164 SESETGRRMDSRVRPPTTEQRDRPPASPP 250
           S+  +GRR   R RPP   +  RPP   P
Sbjct: 37  SDDYSGRRGGGRHRPPRPPRPPRPPRPTP 65


>AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical
           protein Y77E11A.2 protein.
          Length = 370

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 347 SIRNSTRNSVRVSTGPAGRIGPLTLSRIDPPRWAATRAVGPSVPW 213
           S+ N     + ++T P G  G L +   +PPR    R V  ++ W
Sbjct: 131 SVVNDNTPIIGINTDPIGSEGHLCVGGKNPPRDLIERLVSGNLKW 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,730,148
Number of Sequences: 27780
Number of extensions: 171346
Number of successful extensions: 825
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)