Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P17
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    23   4.0  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    23   7.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    22   9.3  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    22   9.3  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 147 LIINEKWCF*YNNVMW 100
           LI+NE W F Y+   W
Sbjct: 321 LILNELWAFNYSQQRW 336


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 100 PHNVIVLKTPLFINN*HYY 156
           PH    L+ P F+N  HY+
Sbjct: 397 PHLYYYLRGPAFLNRIHYW 415


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 107  LCGEKKEQYYILE*VTSN 54
            LC +K E YY+   + SN
Sbjct: 1024 LCPDKDESYYLQRSIVSN 1041


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 180 PFFYTLYKIIMLIINEKWCF*YNNVMW*KKRTILYIRISNLE 55
           P  YTL  +I  +  E +    ++ +W  +R  L IR++ LE
Sbjct: 19  PNLYTLQGVIQYLQYEAFKNERDHNLWEIERAELKIRVAQLE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,848
Number of Sequences: 5004
Number of extensions: 9877
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)