Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P17
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    27   2.4  
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    27   2.4  
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    27   2.4  
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    27   2.4  

>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 128 GVFNTITLCGEKKEQYYILE 69
           GVF T+TLC +K +Q  +++
Sbjct: 11  GVFKTVTLCEQKMQQVSLMQ 30


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 128 GVFNTITLCGEKKEQYYILE 69
           GVF T+TLC +K +Q  +++
Sbjct: 12  GVFKTVTLCEQKMQQVSLMQ 31


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 117 YNNVMW*KKRTILYIRISNLESIMHLDHVHTA 22
           YNNV W K    L   I  +ESI   +H HTA
Sbjct: 40  YNNVAWTKTHLALLGHIGYIESIN--EHRHTA 69


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 128 GVFNTITLCGEKKEQYYILE 69
           GVF T+TLC +K +Q  +++
Sbjct: 12  GVFKTVTLCEQKMQQVSLMQ 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,938,727
Number of Sequences: 27780
Number of extensions: 56273
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)