Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P16
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    63   2e-11
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   4.9  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   4.9  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    24   6.5  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    24   8.6  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +1

Query: 49  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 225
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 226 ASY 234
           A+Y
Sbjct: 61  ATY 63


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 217 CTTSKHEVGWQQVLCRLAQIL*YQLEKECIQTHNFFQLN 101
           C+T K E   +   CRL  I   + +  CI  +N   LN
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLN 198


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 218 ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 319
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
          L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 57 QCHFSIRNLIYSSKP 13
          Q H S+RN I SSKP
Sbjct: 17 QFHISVRNSIQSSKP 31


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 175 KVPAASLPHVLRWYSHI 225
           K P A +PHV +W+  I
Sbjct: 770 KQPVAFIPHVAQWFQGI 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,952
Number of Sequences: 5004
Number of extensions: 20823
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)