Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P16
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 62 1e-10
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 56 7e-09
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 54 3e-08
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.013
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 1.1
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236... 27 3.5
02_03_0126 - 15536727-15537353 27 6.1
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321... 26 8.1
01_06_0241 - 27813076-27813622,27813695-27814125 26 8.1
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 62.1 bits (144), Expect = 1e-10
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 49 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 228
+ L +V + GL +L++YL RSY+SGY S+ D+ VF + PAAS +V RWY HI+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 229 S 231
+
Sbjct: 82 A 82
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 56.4 bits (130), Expect = 7e-09
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 61 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIAS 231
D+ TA GL L Q+L+ ++YVSG S+ DIKVF V P A P+ RWY +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 54.4 bits (125), Expect = 3e-08
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 61 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHI 225
+V + GL +L++YL RSY+SGY S D+ V+ P++S +V RW++HI
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 35.5 bits (78), Expect = 0.013
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +1
Query: 82 LNELNQYLAERSYV--SGYTPSQADIKVFEQV-------GKVPAASLPHVLRWYSHI 225
L LNQ L+++S + +G+ PS ADI VF + G+ PHVLRW +I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.1 bits (62), Expect = 1.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 73 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQV---GKVPAASL----PHVLRWYSHIAS 231
AQ L+ + +LA Y++G S AD + K P A L PHV W+ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204
Query: 232 YTPAERKT 255
PA +KT
Sbjct: 205 -RPAWKKT 211
>08_02_0695 +
20122838-20122949,20123238-20123335,20123520-20123696,
20123790-20123890,20124049-20124124,20124213-20124272,
20124362-20124546,20124638-20124734,20124817-20124903,
20124989-20125047,20125157-20125248,20125436-20125513,
20125617-20125777,20125880-20126098
Length = 533
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 97 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 204
QY E + V+GY P + F + VP AS P V
Sbjct: 441 QYFNEYTSVAGYGPVHTGARWFNDMINVPFASKPFV 476
>02_03_0126 - 15536727-15537353
Length = 208
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 73 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL 195
A G ++NQ LA++S + KV E+ ++ +ASL
Sbjct: 17 ALGAFDVNQMLADKSQYGSFLKLLTQTKVAEETNRLKSASL 57
>09_03_0154 +
12831120-12831222,12831761-12831858,12832019-12832195,
12832307-12832407,12832503-12832578,12832665-12832724,
12832810-12832994,12833078-12833174,12833279-12833365,
12833453-12833511,12833617-12833708,12833821-12833898,
12834000-12834160,12834267-12834485
Length = 530
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 97 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 204
QY E + V+GY P + F + VP +S P V
Sbjct: 438 QYFNEYTAVAGYGPVHTGARWFNDMINVPFSSKPFV 473
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 76 QGLNELNQYLAERSYVSGYTPSQAD 150
QG N +N+YL++ + ++ Y P + D
Sbjct: 216 QGNNSVNEYLSQFNKLARYAPEEVD 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,448,717
Number of Sequences: 37544
Number of extensions: 138746
Number of successful extensions: 307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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