Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P16
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    70   5e-13
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    29   1.4  
Z68879-8|CAE17858.1|   93|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 70.1 bits (164), Expect = 5e-13
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +1

Query: 55  LGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL-PHVLRWYSHIAS 231
           + DVK+  GL   N  LAE+++ +G+  S  D ++F  +G  P AS  P+V RWY+++AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 232 YTPAERKTWS 261
           YT AERKTW+
Sbjct: 62  YTDAERKTWA 71


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 79  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 186
           G+N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 117 GMNQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 79  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 186
           G+N+LNQ L + +Y +G+  +++ +      GK+ A
Sbjct: 93  GMNQLNQSLLQNTYATGWKHTRSAVAPIFSTGKMKA 128


>Z68879-8|CAE17858.1|   93|Caenorhabditis elegans Hypothetical
           protein K08F4.12 protein.
          Length = 93

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 34  ISNRKMALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFE 165
           + N+K++  + +  +  N + + L +    SGY  S AD K+ E
Sbjct: 17  VENQKISSSNSECLKKSNSITKKLVQVRNYSGYAESHADEKIVE 60


>Z66495-2|CAA91267.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.2 protein.
          Length = 502

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 85  NELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 186
           N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 119 NQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,987,747
Number of Sequences: 27780
Number of extensions: 117804
Number of successful extensions: 270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)