Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P15
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   0.91 
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   2.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   3.7  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   6.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   8.5  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    24   8.5  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 248 KALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQ 373
           K + L  +   I++ K+ GQ TLN        +EK+V  FK+
Sbjct: 174 KLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 106 AKFSRHFVKWVDRSWSVGTNQSKQVGIV 23
           A FS H +  V R W+  TN SK++GI+
Sbjct: 262 AYFS-HDISNVPRDWNKVTNYSKRLGII 288


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 32  DLLTLVRTYRPRSINPLDEMPAKLRAVVING-QHIFTFDG 148
           DLL  +    PRSIN + ++P  L    I+  ++ F++DG
Sbjct: 377 DLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDG 416


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 354 TYSRSNRPTDVSASALNTD*WPS 422
           T+++ + P+DVSAS LN    PS
Sbjct: 332 TFNQPSGPSDVSASFLNLQAMPS 354


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   RGADIWRLSRLAYFGSYLQTTI 69
           +GAD   + RLA    YLQTTI
Sbjct: 677 KGADTVIMERLASDNPYLQTTI 698


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 254 LVLEDKSGT-IIELKDNGQVTLN 319
           L+ E K  T ++E+ DNG+ TLN
Sbjct: 108 LIKESKKDTWLLEVADNGKFTLN 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,062
Number of Sequences: 5004
Number of extensions: 35695
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)