Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P15
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644... 29 2.0
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 28 3.6
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 27 4.7
05_05_0351 - 24319356-24319385,24319470-24320902,24321011-243211... 27 4.7
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 27 6.2
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 27 6.2
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 27 6.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 6.2
>07_03_0941 -
22763733-22763970,22764077-22764213,22764282-22764470,
22765238-22765756,22766319-22767357,22767665-22767759,
22768253-22768357
Length = 773
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 111 WSSTD-STFSRSTANT*PSPDSAATCRYTTFLTETSLYSCSY 233
W+ + TF+R P P+S + R +TSL CSY
Sbjct: 295 WAEYEIETFARLVKENSPLPESVSALRSACICIQTSLTHCSY 336
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 27.9 bits (59), Expect = 3.6
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 33 TCLLWFVPTDHDRSTHLTKCLLNFALWSSTDSTFSRSTANT*PSPDSAATCRYTTFLTET 212
T W +P+D R T LW+ STF R+TA + P T RY+TF T
Sbjct: 783 TAASWPMPSDIRRFAETTAASWAM-LWTLRYSTFRRTTAASWP---MLWTLRYSTFRRTT 838
Query: 213 S 215
+
Sbjct: 839 A 839
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 33 TCLLWFVPTDHDRSTHLTKCLLNFALWSSTDSTFSRSTANT*PSPDSAATCRYTTF 200
T W +P+D R T LW+ STF R+TA + P T RY+TF
Sbjct: 601 TAASWPMPSDIRRFAETTAASWPM-LWTLRYSTFRRTTAASWP---MLWTLRYSTF 652
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 209 NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAAHGFPVIEKDVFAFKQTNG 382
N +L + G P + + G++ + G VTL+ AHG + DV +F G
Sbjct: 697 NTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGAHGRTISSVDVASFGVARG 756
Query: 383 RIG 391
R G
Sbjct: 757 RCG 759
>05_05_0351 -
24319356-24319385,24319470-24320902,24321011-24321180,
24321302-24321485,24323094-24323264,24324002-24324125
Length = 703
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 184 HVAALSGEGQVFAVERENVLSVDDHSAKFSRHFVKWV 74
H ++L G+ +V ER+N S+++ + F H V+ V
Sbjct: 597 HSSSLDGDNRVKTCERKNDASLNNEKSDFRFHLVEHV 633
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 124 TAHFHVRRQTLDLPRTVPLRVDTRLF 201
TAH + T +P VPL VDT +F
Sbjct: 341 TAHRFLSNMTALVPNRVPLAVDTHMF 366
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 237 TDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTAS 338
T PR+ +WR +P+LS K +++ + P+AS
Sbjct: 662 TTMPRNRYWRKPVKPTLSAKKLEQSAQRKPPSAS 695
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 295 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 375
R W T WSC R C G R+R+ T+
Sbjct: 51 RDWWWSTSWSCWRKACRKSGGDRLRILTE 79
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 233 QNGQPKALVLEDKSGTIIELKDNG---QVTLNGAAHGFPVIEKDVFAFK 370
++ Q + LVL+DKS + + KD Q NG V +KD+ A +
Sbjct: 363 EDKQKEILVLQDKSNMMQDKKDQNNLEQTNSNGGEEELQVKDKDLVALE 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,802
Number of Sequences: 37544
Number of extensions: 265935
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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