Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P15
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 31 0.26
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 30 0.79
Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81583-7|CAB04668.1| 268|Caenorhabditis elegans Hypothetical pr... 29 1.8
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 29 1.8
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 29 1.8
Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 3.2
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 3.2
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 3.2
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 27 4.2
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 27 4.2
AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical... 27 4.2
Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 7.3
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 7.3
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 7.3
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 7.3
AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate cyc... 27 7.3
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 7.3
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 7.3
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 7.3
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 26 9.7
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 26 9.7
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 31.5 bits (68), Expect = 0.26
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 78 HLTKCLLNFALWSSTDSTFSRSTANT*PSPDSAATCRYTTFLTETSLYSCSYRTDSP 248
HL L +F S D R + P + +C+ TT+ T+ YSCS + +P
Sbjct: 28 HLLTTLFHFQATSIRDK---RQSCGCAPRVQPSCSCQRTTYTTQPQQYSCSCQNTAP 81
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 29.9 bits (64), Expect = 0.79
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 66 DRSTHLTKCLLNFALWSSTDSTFSRSTANT 155
D+ TH+T ++ AL SSTDST S+S T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879
>Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical
protein K10D11.2 protein.
Length = 340
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 29 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 148
P +TLV+TY IN PL+ L+ VV +GQ FTF G
Sbjct: 297 PTDMTLVKTYTGLEINKAVPLNFQGDVLQFVVSSGQADFTFKG 339
>Z81583-7|CAB04668.1| 268|Caenorhabditis elegans Hypothetical
protein T02G6.7 protein.
Length = 268
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 74 NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 184
+PLD P K+ + +IN ++ TFDG+ F CR++
Sbjct: 77 DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 308 PVHCL*AQ*WFRSCPP 261
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 308 PVHCL*AQ*WFRSCPP 261
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical
protein F16H6.1 protein.
Length = 555
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 233 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 379
Q+G PK+ + +D+SG D G+ NG A GFP++E + TN
Sbjct: 98 QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138
>Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 195 SCIDT*RHCPGKVKCLPSNVKMCC 124
SC+D HC GK CL +M C
Sbjct: 305 SCVDLDMHCDGKKDCLNGEDEMNC 328
>Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical
protein F55G11.5 protein.
Length = 342
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 29 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 148
P + T+V+ Y IN PL+ L+ VV +G+ FTFDG
Sbjct: 298 PTVGTIVKNYTALEINKAVPLNFQGEVLQFVVSSGKADFTFDG 340
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 408 PYLEPRPIRPLVCLNANTSFSMT 340
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 408 PYLEPRPIRPLVCLNANTSFSMT 340
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.9 bits (59), Expect = 3.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 246 GCPFCSCRSTVKFLS 202
GCP C CRS +FL+
Sbjct: 1230 GCPICDCRSPCEFLN 1244
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 56 YRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYV 184
Y R N + A + H+ T+DG T PG+ YV
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYV 879
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 27.5 bits (58), Expect = 4.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 164 PGQCRYVSIHDFFDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 337
P QCR D+ + + +++ +GQP E+K +I+ G++ N HG
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724
Query: 338 PVIEKDVFAFKQTNG 382
VIE+ + K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739
>AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical
protein C35E7.1 protein.
Length = 729
Score = 27.5 bits (58), Expect = 4.2
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Frame = +2
Query: 5 EELISGDYPDLL-TLVRTYRPRSINPLDE---MPAKLRAVVINGQHIFTFDGKHLTFPGQ 172
++ I+G+Y D+ T V T + + + + + LR ++N + F D + PG+
Sbjct: 136 QQFINGEYQDVPNTKVNTLQMKELKRYGQCRSLTHYLRLPILNTSYCFKSDQYIVRVPGR 195
Query: 173 CRYVSIHDFFDRNFTVLLQLQNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHG-FPVIE 349
+FDR F+ + P+ ++ + S LK + VT +G +IE
Sbjct: 196 NNEKPKEFYFDREFSCFMPSLLTVPEDILYPEYSVWSESLKKH--VTFTAVWNGRSEIIE 253
Query: 350 KDVFAFKQ 373
+ V+ +Q
Sbjct: 254 QYVYNCEQ 261
>Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical
protein T04D3.4 protein.
Length = 688
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 104 RAVVINGQHIFTFDGKHLTFPGQCRYVSIHDFFDRNFTVL-LQLQNGQPKALVLEDKSGT 280
+ V++ G +F +GK++ + ++ + +RN + +Q +G ++L +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364
Query: 281 IIEL 292
+EL
Sbjct: 365 QVEL 368
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 473 TNSAGCSLCKCRASSK-LDKK 492
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 473 TNSAGCSLCKCRASSK-LDKK 492
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 688
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 104 RAVVINGQHIFTFDGKHLTFPGQCRYVSIHDFFDRNFTVL-LQLQNGQPKALVLEDKSGT 280
+ V++ G +F +GK++ + ++ + +RN + +Q +G ++L +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364
Query: 281 IIEL 292
+EL
Sbjct: 365 QVEL 368
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 258 TNALGCPFCSCRSTVKFLSKK 196
TN+ GC C CR++ K L KK
Sbjct: 407 TNSAGCSLCKCRASSK-LDKK 426
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 TIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQT-NGRI 388
T IEL +G++ L+G +E+ + AFK+T NG +
Sbjct: 303 TAIELISSGKLDLSGLTRAHYKLEESLEAFKRTQNGDV 340
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 171 CPGKVKCLPSNVKMCCPLMTTARSLAGISSSGL 73
C ++C P+ ++ P+M A + +GISS L
Sbjct: 364 CQAVIRCQPTETQLTTPIMAIAET-SGISSQKL 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,086,871
Number of Sequences: 27780
Number of extensions: 217934
Number of successful extensions: 704
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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