Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P14
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    50   9e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    47   6e-07
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    43   1e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    41   4e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    40   9e-05
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    36   0.001
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   0.93 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    24   5.0  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    24   6.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    23   8.7  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    23   8.7  

>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 50.0 bits (114), Expect = 9e-08
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +3

Query: 24  NFEQIIGSDAPTFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVAD 203
           NF + + +  P+ V+F+A WCG+C    P + +LA+ L +   PV  V   A  N  V  
Sbjct: 40  NFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNL-HSLLPVTAVDCDADQNRAVCS 98

Query: 204 LAGVEILPAFKL 239
              V+  P  KL
Sbjct: 99  QYQVQGFPTIKL 110


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 47.2 bits (107), Expect = 6e-07
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 21  DNFEQIIGSDAP-TFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKV 197
           DNF+ I+  +     V F+A WCGHC    P + +LA    + +S V V  + A++N   
Sbjct: 363 DNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSD-DSNVVVAKIDATENDIS 421

Query: 198 ADLAGVEILPAFK 236
             ++G   +  FK
Sbjct: 422 VSISGFPTIMFFK 434



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 21  DNFEQIIGSDAPTFVMFFASWCGHCATAKPAFSRLATTL-KNGNSPVKVVAVGASDNPKV 197
           +   ++I +D    V F+A WCGHC    P +   A  L K+G S V+V      D    
Sbjct: 30  EGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSE 89

Query: 198 ADLAGVEILPAFK 236
             + G   L  FK
Sbjct: 90  YSIRGYPTLNVFK 102


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +3

Query: 27  FEQIIGSDAPTFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVADL 206
           F+ I+  D    V FFA+WCG C    P F + + T     S    + V      ++A  
Sbjct: 11  FKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTY----SDATFIKVDVDQLSEIAAE 66

Query: 207 AGVEILPAFKL 239
           AGV  +P+F L
Sbjct: 67  AGVHAMPSFFL 77


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 24  NFEQIIGSDAP-TFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVA 200
           NF++++  D     V F+A WCG+C    P +  L    KN    V++V + A     + 
Sbjct: 149 NFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKN-EPNVEIVKINADVFADIG 207

Query: 201 DLAGVEILPAFK 236
            L  V   P  K
Sbjct: 208 RLHEVASFPTIK 219



 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 36  IIGSDAPTFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVAD 203
           I  S     + F+A+WCGHC +  P +  L    ++ N  V +  + A  +  VAD
Sbjct: 35  IRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHND-VLIGKIDADTHSDVAD 89


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 29/67 (43%)
 Frame = +3

Query: 39  IGSDAPTFVMFFASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVADLAGVE 218
           I +D  T V F+A WCG C   KP   +L+      N     +AV A     +A   GV 
Sbjct: 32  ISADKVTVVDFYADWCGPCKYLKPFLEKLS----EQNQKASFIAVNADKFSDIAQKNGVY 87

Query: 219 ILPAFKL 239
            LP   L
Sbjct: 88  ALPTMVL 94


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 72  FASWCGHCATAKPAFSRLATTLKNGNSPVKVVAVGASDNPKVADLAGVEILPAF 233
           +A WCG C    P FS+LA+  K  +       V   +  ++A   GV+ +P F
Sbjct: 27  YADWCGPCKAISPLFSQLAS--KYASPKFVFAKVNVDEQRQIASGLGVKAMPTF 78


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 277 RRCSPRRVYRICHSLNAGKISTPAKSATLGLSDAPTAT 164
           R+  PRR   +   LN+  +S P  SAT  L  +P ++
Sbjct: 303 RQARPRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSS 340


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 69  FFASWCGHCATAKPAFSRLATTLK 140
           F  S CGHC T +    R+A  +K
Sbjct: 324 FRCSVCGHCVTVEIDRGRIAEPIK 347


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 235 LNAGKISTPAKSATLGLSDAPTATT-FTGELPFFSVVAKRLKAGLAVAQWPHHDAKNMTK 59
           L A KI  P K +     D     + FT E+P  SVVA    +     ++ +   +  T 
Sbjct: 493 LCAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTT 552

Query: 58  VGASDPI 38
           +  SD I
Sbjct: 553 IDTSDDI 559


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 235 LNAGKISTPAKSATLGLSDAPTATTFTGELPFFS 134
           L  G +    +     LS+  T     GELPFFS
Sbjct: 860 LETGMVKASYQMDRESLSENITCLCVVGELPFFS 893


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 229 RSNCDKSGRHVADYTGDRSIEDMVEFC 309
           R  C K G  +  +  D S+E  + FC
Sbjct: 331 RFTCTKCGATLGPFFQDSSVEVKISFC 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,346,179
Number of Sequences: 5004
Number of extensions: 24372
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)