Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P14
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   0.69 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.7  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   8.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 261 DVSTGFVTV*TLARSLHRPNLPLWDYPTR 175
           D+STG V + T       PNL  W  P R
Sbjct: 819 DLSTGKVEMITGVGKATSPNLTKWGNPNR 847


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 99  TAKPAFSRLATTLKNGNSPVKVVAVG 176
           +A+P+F       KN  +PV  VA G
Sbjct: 49  SARPSFKTFDKGPKNYTTPVNFVAGG 74


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 275 PV*SATCLPDLSQF 234
           PV S  C PDLS F
Sbjct: 30  PVKSLVCSPDLSVF 43


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 100 VAQWPHHDAKNM 65
           VAQ PHH + NM
Sbjct: 7   VAQLPHHLSPNM 18


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -1

Query: 309 AKFDHVFYGTVAGVVRDVSTGFVTV*TLARSLHRPNLPLWDYP 181
           AK    FY T A     +++G  T       L+RP+     +P
Sbjct: 118 AKDFQTFYKTAAWARLRMNSGMFTTAFSIAVLYRPDTKYMKFP 160


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -1

Query: 309 AKFDHVFYGTVAGVVRDVSTGFVTV*TLARSLHRPNLPLWDYP 181
           AK    FY T A     +++G  T       L+RP+     +P
Sbjct: 118 AKDFQTFYKTAAWARLRMNSGMFTTAFSIAVLYRPDTKYMKFP 160


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 26 LRTNNRI*RTYFCHVFRI 79
          LRT  ++  TYF H + I
Sbjct: 29 LRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 26 LRTNNRI*RTYFCHVFRI 79
          LRT  ++  TYF H + I
Sbjct: 29 LRTRTKLQPTYFHHTYII 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 81  WCGHCATAKPAFSR 122
           WC +   A+PA+ R
Sbjct: 954 WCYYGGDARPAYRR 967


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 61  KVGASDPIICSKLSSNASL 5
           K   SD +IC    SNAS+
Sbjct: 217 KKAMSDLVICKLSHSNASV 235


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 61  KVGASDPIICSKLSSNASL 5
           K   SD +IC    SNAS+
Sbjct: 217 KKAMSDLVICKLSHSNASV 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,552
Number of Sequences: 438
Number of extensions: 1545
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)