Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P13
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    31   0.058
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   5.0  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   5.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   5.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.0  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   6.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    24   8.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   8.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    24   8.8  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 31.5 bits (68), Expect = 0.058
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -1

Query: 286 IITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 176
           II+ W+S+++++SS  G + ++   LLFLR    ++S
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSS 502


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 212 RQHEHRIHSESRAHQHNHRRPRGDDEHAH 298
           R++E R    SRAH +++   R DD+ +H
Sbjct: 189 RRYEERSSRSSRAHDYDYEDLR-DDDRSH 216


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  AVLLVGGEAKFYKDCGSQLATVQTVMVTGCSQDARECVLRR 203
           A++++       + C     ++  VMVT C Q AR+  L R
Sbjct: 405 AIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRARQSHLNR 445


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 221 EHRIHSES---RAHQHNHRRPRGDD 286
           E+R +S S   R H   +RRPRGD+
Sbjct: 241 EYRRNSRSDYRRPHDDEYRRPRGDE 265


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 324 ACKDKGLTCPLQPNVLANYTATLPVLKSYPKV 419
           AC  KGL+CP    VL      LP LK+ P +
Sbjct: 216 ACH-KGLSCPTGLGVLYVAPDVLPQLKNVPPI 246


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 171 CTRSP*QSARWLTATHNPCKIWLHH 97
           C +S  +S  WL   HN  +IW+ H
Sbjct: 407 CYKSFRESRTWLHFLHNFSRIWILH 431


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 305 KRYGHVHHHPVDVCG 261
           KR+ +  H P+ VCG
Sbjct: 151 KRFAYTRHEPIGVCG 165


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 304 NGMGMFIITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 176
           +G+G+FIIT + S+++ VS   G+ +  +L   +LR   S+ S
Sbjct: 228 SGIGIFIITFFISLLIGVS--IGLITALLLKYSYLRRYPSIES 268


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 248 AHQHNHRRPRGDDEHAHTV 304
           A + +  RP  DD HAHTV
Sbjct: 691 AQEQDFVRPVVDDSHAHTV 709


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 208 VTSA*TSNSLRIKSSPA*PQTST 276
           +TS  TS++++I S P+ P T T
Sbjct: 211 ITSMNTSSNVKISSDPSSPSTQT 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,882
Number of Sequences: 5004
Number of extensions: 35033
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)