Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P13
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 33 0.10
04_04_1377 - 33064906-33065607 31 0.31
01_03_0055 + 12074512-12076155 29 1.2
06_03_0094 + 16573075-16573268,16574636-16574996 29 1.6
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 29 1.6
08_02_0707 - 20212190-20214592 28 2.9
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 28 3.8
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 27 5.0
01_07_0326 - 42750189-42750965 27 5.0
05_05_0266 - 23694466-23696787,23696885-23697187 27 6.6
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 27 8.7
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 8.7
02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257 27 8.7
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 27 8.7
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 212 RQHEHRIHSESRAHQHNHRRPRGDD 286
R+ + HS SR+H+H+H R GDD
Sbjct: 1225 RRSSKKDHSSSRSHRHHHHRSSGDD 1249
>04_04_1377 - 33064906-33065607
Length = 233
Score = 31.5 bits (68), Expect = 0.31
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 158 GDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEHAH 298
G RV + + G+ A E + H H H H +P G+++H H
Sbjct: 157 GSRVDALQTGMMVAPTT-HHRERQKHHHHHHHHHPHLQPHGEEQHHH 202
>01_03_0055 + 12074512-12076155
Length = 547
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 224 HRIHSESRAHQHNHRRPRGDD 286
HR+H H +H+R RGDD
Sbjct: 357 HRVHHHHHHHNGHHKRRRGDD 377
>06_03_0094 + 16573075-16573268,16574636-16574996
Length = 184
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 270 VHGVMMNMPIPFPLADRDACKDKGLTCPLQPNV 368
+HG ++++P P P A DA + TCP P V
Sbjct: 18 LHGCLVSLPPPPPPALEDARNHRHTTCPRLPPV 50
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 222 NIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVL 401
+I +PN + ++++D G + + A+ DA K + T Q N NY +T+PV
Sbjct: 435 SIALSPNVQWLAVSSD-KGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVT 493
Query: 402 KS 407
++
Sbjct: 494 QT 495
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRRPRGDDEH 292
H H HS S +H H+H G ++H
Sbjct: 500 HSHS-HSHSHSHSHSHSHVHGHEDH 523
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +3
Query: 171 SQDARECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTC 350
S ++ + R + + F EL S TTD G N L D C ++ LT
Sbjct: 386 SLSTKDAYIVREGDPVSEMLFVIRGELESSTTD--GGRTNFFSSITLRPGDFCGEELLTW 443
Query: 351 PLQPNVLANYTATLPVLKSYPKV 419
L PN N+ + ++S +V
Sbjct: 444 ALMPNPSLNFPQSTRTVRSVTEV 466
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 233 HSESRAHQHN-HRRPRGDDEHAH 298
H E + H H+ H +P G+++H H
Sbjct: 703 HREQQKHHHHPHLQPHGEEQHHH 725
>01_07_0326 - 42750189-42750965
Length = 258
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAPGHHDSLHG 141
G G+LL+ SEF A V V Q+ + + A G + G
Sbjct: 218 GPIGDLLVSSEFSKMASVLVMQQYVITAAAAAGGARRAADG 258
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAP 165
G G+LL+ SEF A V V Q+ + + L P
Sbjct: 795 GPIGDLLVSSEFSKMASVLVMQQYVITAPLPPP 827
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 342 GLYPCKRLCQLEETVWACSSSPRGRLWL 259
GLY C+ + E ++W+ S GR WL
Sbjct: 161 GLYMCQEIMAHEGSIWSIKFSTNGR-WL 187
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 191 RAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEHAHTVXXXXQRR 325
RA ++ + HR H + H+H H GD H H QRR
Sbjct: 525 RARRRHQKGRHHRHHHD---HRHRHGHSHGDHHH-HYHGGHHQRR 565
>02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257
Length = 506
Score = 26.6 bits (56), Expect = 8.7
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 204 NSNVSMNIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKD-KGLTCPLQPN---VL 371
+SN+ + +F+ + + +TT VHG +N+ + R D KG + P + +L
Sbjct: 163 DSNLQIQDDFSRDMVGSHVTTKVHGYCVNLDLDITFHLRPGKDDKKGRSIPGATDSKALL 222
Query: 372 ANY---TATLPVLKSYPKVS 422
NY + LPV + K+S
Sbjct: 223 LNYNHLSGPLPVNIGFSKLS 242
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 102 EAKFYKDCGSQLATVQTVMV-TGCSQDARECVLRRNSNVSMNIEFTPNQELTSITTDVHG 278
EA F CG+ + Q + T +DA L N+ I PN T TTD+
Sbjct: 156 EALFNTSCGALVFKDQYIEASTSLPRDAALYGLGENTQPG-GIRLRPNDPYTIYTTDISA 214
Query: 279 VMMN 290
+ +N
Sbjct: 215 INLN 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,297
Number of Sequences: 37544
Number of extensions: 257597
Number of successful extensions: 733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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