Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P13
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = +2

Query: 155 HGDRVQSRR*GVRAAKKQ*RQH--------EHRIHSESRAHQHNHRRPRGDDEHAHTV 304
           HGDR+Q +R    A  K  R             +  ++ +H  N+  P+G DE+ H +
Sbjct: 482 HGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI 539


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 168 CSQDARECVLRRNSNVSMNI 227
           CS+ +  C+  RNS+  +NI
Sbjct: 100 CSKTSNPCLPHRNSDRDLNI 119


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/49 (22%), Positives = 19/49 (38%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHNHRRPRGDDEHAHTVXXXXQRRLQG*RPYLPTPAK 364
           H H   ++S  H H  + P   + ++  V        Q   P  P+P +
Sbjct: 352 HHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPR 400


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +2

Query: 233 HSESRAHQHNHRRPRGDDEHAHT 301
           H+    H H H  P     HA T
Sbjct: 417 HTMGHGHSHIHATPHHHHSHAAT 439



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHN 262
           H H  H+ +  HQH+
Sbjct: 431 HHHHSHAATPHHQHS 445


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/47 (17%), Positives = 23/47 (48%)
 Frame = +2

Query: 131 AVSHRADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRR 271
           ++ HR     ++ +     +R  +++ R+H  R+ S+ +  Q   ++
Sbjct: 53  SIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQ 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,057
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)