Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P12
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   2.6  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   6.0  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    24   6.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   7.9  

>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 236 RQTNWYVIGRMWHVTSLERERI 301
           R T WY  GR + V  L RE++
Sbjct: 346 RDTGWYRSGRYYKVRDLMREKL 367


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 299 FSLVRVTSRATFDQSRTSSFDERANSTTHCIVTSLAHKTYLFH*LQ*KCFTRDFAL 132
           FS++ V       Q R S+      S    I+ +L H  YLF  +     T DF +
Sbjct: 260 FSIIMVLESLAKSQYRKSNVLAADRSLCEYIILTLFHMEYLFSFVASSWSTLDFVI 315


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 71   DAAVASRGRIYNMYNYRCLR 130
            +A  ASR R+Y +YN+R L+
Sbjct: 967  NAEDASRLRLYEVYNHRILK 986


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 20  ALKPN*NVYCEMRFLSCDAAVASRGRIYNMY 112
           ALK    +Y    + SC   V S G IYN+Y
Sbjct: 236 ALKTINQIYLYFSYPSCLVRVYSIGIIYNIY 266


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 239 QTNWYVIGRMWHVTSLERERIVQCDPHV 322
           Q NWY    M  +    R+ IV C  H+
Sbjct: 550 QPNWYQSSNMKLIVDTFRDYIVDCIEHM 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,078
Number of Sequences: 5004
Number of extensions: 21835
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)