Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P12
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0081 + 20745627-20748144,20748211-20748308                       31   0.34 
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    27   4.1  
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467...    27   5.5  
01_06_0605 + 30548588-30548732,30549004-30549094,30549470-305495...    26   7.2  
03_05_0600 + 26021863-26022469,26022562-26022992                       26   9.6  

>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -2

Query: 335 HAPPPRADHTALFSLVRVTSRATFDQSRTSSFDERANSTTHCIVTSLA 192
           HAP P AD    F +   T+R +FD    SS    ++ST H   TSLA
Sbjct: 450 HAPAPPADVPPGFIVSLTTARYSFDYDGVSS----SSSTPHVPTTSLA 493


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 274 VPHSTNHVPVRLTNERIVRHTA**RHSLTKPTCSINYNK 158
           VPH +   PV+   E I R     RHSL K  C I + K
Sbjct: 334 VPHISEVNPVKYPYEVIFRSIFLSRHSLVKNHCFIRFFK 372


>12_02_0281 +
           16744690-16744727,16744744-16745611,16746195-16746725,
           16747737-16748549
          Length = 749

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 200 TSLCSVSYYSLVRQTNWYVIGRMWHVTSLER 292
           T+    +YY L+     +++G  W++ S+ER
Sbjct: 285 TAFAGAAYYLLLYMLASHMVGAFWYLLSIER 315


>01_06_0605 +
           30548588-30548732,30549004-30549094,30549470-30549536,
           30550664-30550778,30550939-30551042
          Length = 173

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 260 QSRTSSFDERANSTTHCIVTSLAHKTYLFH*LQ*KCFTRDFALHVNIDNYTYYIFGRET 84
           Q R S FD+   S  HC + +LA    +      +C+  D  +   + N   Y+F  +T
Sbjct: 67  QERCSKFDDTMISQVHCAMGNLAILKSIMEVNDEECWIADPCMK-RLPNRGNYVFSDQT 124


>03_05_0600 + 26021863-26022469,26022562-26022992
          Length = 345

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 232 RSSNELVRDWSNVARDVTRTRENSAV*SARGGG 330
           RS N+    W N+ RD  + R +    +  GGG
Sbjct: 85  RSQNQCNDRWDNLMRDYKKVRAHELAAAGGGGG 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,446,147
Number of Sequences: 37544
Number of extensions: 132285
Number of successful extensions: 307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)