Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P12
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.34 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   7.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   7.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.34
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 53  MRFLSCDAAVASRGRIYNMYNYRCLRVMRNRV 148
           +R +  D    SRG ++++ N + L + RN+V
Sbjct: 483 LRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 248 WYVIGRMWHVTSLERERIVQCD 313
           W+ +G    +TS+ R ++ +CD
Sbjct: 236 WHTVGNCDGLTSVFRIQVDECD 257


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 233 RANSTTHCIVTSLA 192
           R  S T+C V+SLA
Sbjct: 67  RLRSVTNCFVSSLA 80


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 116 NYTYYIFGRETRPQRHS*GNAFR 48
           ++ YY++ RE   Q H   N  R
Sbjct: 334 DFPYYMYSREQYSQSHLISNENR 356


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 229 ARSSNELVRDWSNVARDVTR 288
           A   NE++ DW  VA  + R
Sbjct: 464 ADKDNEVIEDWKFVAMVLDR 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,231
Number of Sequences: 438
Number of extensions: 1761
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)