Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P10
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   1.4  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   1.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   4.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    23   5.7  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   7.5  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    23   7.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    23   9.9  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    23   9.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    23   9.9  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 181 RCIWRKQTQCEIRAWRTERSC*NFRRSS 264
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 128 ANEDEGKLELFSGVVIEKDASGENK 202
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 69   CVYCVWYYA 95
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 93  HNTKHNTRIFSKFTLKLSR 37
           H +  NT +FS FT  LSR
Sbjct: 344 HISSSNTSLFSNFTFFLSR 362


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 82  TQYTHFLKIYSEVIQDC 32
           T+  +  KIY E++QDC
Sbjct: 652 TKIENGTKIYEEILQDC 668


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 85  QTQYTHFLKIYSEVIQD 35
           +  YTHF K Y+ ++Q+
Sbjct: 369 ERHYTHFAKAYTALLQE 385


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 PGAANEDEGKLELFSGVVIEKDASGENKLNVK 214
           P    +DE +  L S + ++K+A  +NK + K
Sbjct: 838 PSLLIDDENEANLTSSIGLKKNAKQKNKKSSK 869


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 131 NEDEGKLELFSGVVIEKDASGENKLNVKFE 220
           NE+E KL+   G+   +DAS   K  V+ E
Sbjct: 574 NEEEPKLKGVLGMKFMRDASNRQKALVQDE 603


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   FGTRRGLRKSTILDNFRVNFEKM 70
           FG   G+ +ST+LD  R+ +EK+
Sbjct: 290 FGDHLGV-ESTVLDKRRLQYEKL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,813
Number of Sequences: 5004
Number of extensions: 17395
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)