Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P10
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 26 3.6
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 26 4.7
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 26 4.7
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 26 4.7
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419... 25 6.3
06_03_0784 - 24557089-24557198,24557296-24560725 25 6.3
04_04_0311 - 24309411-24309525,24309627-24309841 25 6.3
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541... 25 8.3
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 25 8.3
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 161 RIAPVSLHLHSPPLVHPCKLPPCIIPNTIHAFSQNL 54
++ P S L+ PP P +LP C++P + +S L
Sbjct: 41 QLPPSSHALYPPP---PPQLPTCVLPAGVRIYSSGL 73
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 161 RIAPVSLHLHSPPLVHPCKLPP 96
R++P+ L +PPL P LPP
Sbjct: 106 RVSPIDLDDSAPPLPLPLPLPP 127
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 184 CIWRKQTQCEIRAWRTERSC*NFRRSSW 267
CI + T E+R+WR + N R W
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKW 261
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 152 PVSLHLHSPPLVHPCKLPPCIIPNTIHAFS 63
PV PP+ C PC P++ FS
Sbjct: 50 PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79
>10_08_0356 +
17141107-17141165,17141502-17141650,17141748-17141969,
17142051-17142187,17142319-17142570,17143915-17144063,
17144476-17144540,17144633-17144701,17145014-17145144,
17145218-17145505,17145669-17145811,17145898-17145951,
17146000-17146080,17149048-17149222,17149223-17149647,
17149929-17150144,17150279-17150309
Length = 881
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 142 FIFIRRPWCTPASYHHA*YQTQYTHFLK 59
F+F R + TP SY + HFLK
Sbjct: 781 FVFPREEYITPTSYPNGFITRMVKHFLK 808
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 134 HSPPLVHPCKLPPCIIPNTIHAFSQNL 54
HSP L H L +PNT H S +L
Sbjct: 607 HSPDLNHMIHLRCLTLPNTNHPLSDSL 633
>04_04_0311 - 24309411-24309525,24309627-24309841
Length = 109
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 178 ERCIWRKQTQCEIRAWRTERSC*NFRRSS 264
+RC+ R + + E+ +WRT + RR S
Sbjct: 57 DRCVQRMRARRELCSWRTRNLWGSLRRGS 85
>11_01_0665 -
5413561-5413593,5413785-5413907,5414020-5414259,
5414564-5415184
Length = 338
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -3
Query: 145 PFIFIRRPWCTPASYHHA*YQTQYTHFLKIYSEV 44
P++ + R CT + + H Y H K + E+
Sbjct: 31 PYVIVERESCTASLWRHRAYDRLKLHLAKEFCEL 64
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 152 PVSLHLHSPPLVHPCKLPPCIIPNTIHAFSQNL 54
P ++ L S HPC LP IP + F ++
Sbjct: 192 PSAISLMSGTGSHPCMLPGLCIPVVLFVFEDDI 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,800,081
Number of Sequences: 37544
Number of extensions: 121072
Number of successful extensions: 295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -