Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P10
         (270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   4.2  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   4.2  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z48585-3|CAA88485.1|  322|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical
           protein F57G4.5 protein.
          Length = 259

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 58  IYSEVIQDCTLTKATPR 8
           I+ E IQ+C LTK TP+
Sbjct: 179 IFEEDIQECPLTKRTPK 195


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 182 LSQ*QHQRIAPVSLHLHSPP 123
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 182 LSQ*QHQRIAPVSLHLHSPP 123
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 182 LSQ*QHQRIAPVSLHLHSPP 123
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 113 PCKLPPCIIPNT 78
           PCK PPCII  T
Sbjct: 257 PCKNPPCIIKTT 268


>Z48585-3|CAA88485.1|  322|Caenorhabditis elegans Hypothetical
           protein ZK673.3 protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 140 EGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEE 259
           E K+E       EK    EN + VK EP E  E  +T  +
Sbjct: 216 EIKMESPQEEAAEKSKFSENLVEVKLEPIETHELDKTISD 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,697,998
Number of Sequences: 27780
Number of extensions: 102354
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)