Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P09
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 40 6e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 34 0.004
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 29 0.15
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 29 0.20
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 27 0.47
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 0.62
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 0.82
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 1.1
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 1.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 1.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 2.5
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 2.5
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 25 2.5
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 25 3.3
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 25 3.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 3.3
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 24 5.8
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 24 5.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 23 7.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 23 7.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 7.7
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 23 7.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 23 7.7
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 40.3 bits (90), Expect = 6e-05
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = +2
Query: 2 HEGIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNM-- 175
HE F++ L+ H+R H P C IC ++F++A + H+ +LH +
Sbjct: 179 HESCVGHEGFEKWSQLQNHIREAH-----VPSCSICGRQFKTAAHLRHHV-VLHQTTLEE 232
Query: 176 -NTHPCGL--CTISFSSNEALTIHLQTKHLAEDEMC-ECEECNIVF 301
T+ C + C SF+ + AL H+ H E M C+ C F
Sbjct: 233 RKTYHCPMEGCKKSFTRSSALKKHISVIH--EGNMAFHCDSCGTKF 276
Score = 30.3 bits (65), Expect = 0.067
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Frame = +2
Query: 14 ECETLFKEKRSLRKHVRTKHPNSVLFP---ECHICHKRFESAKSCKIHLKLLHSFNMNTH 184
+CE F K+ L+ HV H + + E + H+ FE + H++ H
Sbjct: 150 DCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAH-----VP 204
Query: 185 PCGLCTISFSSNEALTIHLQTKHLAEDEM----CECEECNIVF 301
C +C F + L H+ +E C E C F
Sbjct: 205 SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSF 247
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 34.3 bits (75), Expect = 0.004
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 14 ECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKL 157
EC FK LR+H+R+ H + F C IC KRF + + H +L
Sbjct: 427 ECSKKFKRSEHLRRHIRSLHTSEKPF-VC-ICGKRFSRRDNLRQHERL 472
Score = 25.0 bits (52), Expect = 2.5
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 32 KEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTISF 211
+ + S RK + P F C C K+F+ ++ + H++ LH+ + C +C F
Sbjct: 404 RRQPSNRKTSVPRSPGGKSFV-CPECSKKFKRSEHLRRHIRSLHT-SEKPFVC-ICGKRF 460
Query: 212 SSNEALTIH 238
S + L H
Sbjct: 461 SRRDNLRQH 469
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 29.1 bits (62), Expect = 0.15
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 86 LFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTISFSSNEALTIHLQTKH 253
+FP C C KRF ++ H K HS PC C I + L H+Q H
Sbjct: 30 VFP-CDQCAKRFTRHENLTRH-KACHS-KAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.7 bits (61), Expect = 0.20
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 35 EKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCG 193
E++ L K++ + S+ P+ K+F+ K+ ++L+ F+M H CG
Sbjct: 3 ERKVLNKYIPPDYDPSIRPPKKK---KKFQGPNGGKLTVRLMTPFSMRCHTCG 52
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.5 bits (58), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 111 WHI*HSGNNTEFGCFVRTCFLKLRFSLNSVSHSMP 7
W + GN EF C V F++ RF+L +SH +P
Sbjct: 19 WFLGLKGN--EFFCEVDEDFIQDRFNLTGLSHEVP 51
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 0.62
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +2
Query: 107 CHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTISFSSNEALTIHLQTKHLAEDEMCEC 280
C+KR + + H++ + + C LC F + L HL+ +CEC
Sbjct: 450 CNKRIARKYNVESHIQT--HLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCEC 505
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 0.82
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 95 ECHICHKRFESAKSCKIHLKLLHS 166
+C C F S +CK H+K HS
Sbjct: 209 DCLFCAASFSSFDTCKKHMKASHS 232
Score = 23.4 bits (48), Expect = 7.7
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +2
Query: 44 SLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHL-KLLHSFNMNTHPCGLCTISFSSN 220
S++K + + C +C+K+F S + H+ H N++ S
Sbjct: 54 SIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQRNSRIKKLQSE 113
Query: 221 EALTIHLQTKHLAE 262
+A +I T + E
Sbjct: 114 DASSIASSTLSMGE 127
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 14 ECETLFKEKRSLRKHVRTKHPNSVLFP 94
EC+ F +L KH+RT H L P
Sbjct: 112 ECDRSFTRSDALAKHMRTVHEADTLRP 138
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 122 ESAKSCKIHLKLLHSFNMNTHPC 190
E+ KSC + + LH + NT PC
Sbjct: 140 EAEKSCDFYGQPLHFYRENTSPC 162
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 1.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 104 ICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTIS--FSSNEALTIHLQTKH 253
IC+ F H +H+ C +C FS ++AL HL+ KH
Sbjct: 584 ICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
Score = 25.4 bits (53), Expect = 1.9
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 17 CETLFKEKRSLRKHVRTKHPNSVLFPECHIC--HKRFESAKSCKIHLKLLH 163
C T+F L +H T H + C IC + F + HL++ H
Sbjct: 585 CNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 117 LLWHI*HSGNNTEFGCFVRT 58
LL+H+ HS N T CFV++
Sbjct: 421 LLYHLIHSKNLTNILCFVKS 440
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = -3
Query: 287 ILHTR--TFHL--QPNVSSGGEL*ELRSN*MKWCINHKDAYSY*MNAVVSNGS 141
+LH R + HL QP+V S G + L N W INH D + + +N ++G+
Sbjct: 54 VLHLRGPSDHLTPQPHVDSFGNV--LCWNGEIWQINHSDHHKFTLNRNENDGA 104
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 23 TLFKEKRSLRKHVRTKHPNSVLFPECHICHKR 118
+LF ++ +LRKH+ T + +V F CHK+
Sbjct: 227 SLFPDQ-NLRKHLNTPNQANVDFRATCFCHKK 257
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 24.6 bits (51), Expect = 3.3
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 125 SAKSCKIHLKLLHSFNMNTHPCGLCTISFSS--NEALTIHLQTK 250
S+ + ++H+ +LH + CG +S++S N +LT + + +
Sbjct: 21 SSSTLEVHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTYFEAE 64
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 3.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 140 YKISPIRIFCGIYDIRETTLNSGASYAR 57
YKI+P+RIF G + L G + R
Sbjct: 295 YKINPVRIFAGPFTTSLNGLGFGITLLR 322
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.6 bits (51), Expect = 3.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 74 PNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLC 199
P S + EC ICH+ + AK K+ K L T C +C
Sbjct: 1104 PESGVMIECEICHEWYH-AKCLKMSKKKLRQDEKFT--CPIC 1142
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -1
Query: 307 PFEYYIAFFTLAHFIFSQMFRLEVNCESFVRT 212
P YY + L H + + L NCE +T
Sbjct: 43 PSSYYAELYKLNHLEGAHVIMLGPNCEEAAKT 74
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 16 MRDAIQRETEFEKARAYEAPEFSV 87
++DAI R+ ++ Y+APE S+
Sbjct: 27 LKDAIARKFPIRISQYYDAPELSI 50
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 23.4 bits (48), Expect = 7.7
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +2
Query: 47 LRKHVRTKHPNSVLFPECHICHKRF 121
L +H++ + +++ P CH C + F
Sbjct: 902 LSEHIQYQKRRNIIPPLCHTCRQPF 926
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 7.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 60 TCFLKLRFSLNSVSHSMPS 4
TC L + F+L+ ++ SMP+
Sbjct: 90 TCLLPIAFALSELASSMPT 108
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 164 SFNMNTHPCGLCTISFSSNEALTIHLQ 244
+ N N P G+ +I+ +N ++T LQ
Sbjct: 104 AMNFNEGPTGISSIASKNNSSITSKLQ 130
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 62 RTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHS 166
R KH V+ + H C F A +C + L S
Sbjct: 500 RQKHARIVIVGDAHQCIYGFRGANACAFNENLYPS 534
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 23.4 bits (48), Expect = 7.7
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 17 CETLFKEKRSLRKHVRTKHPNSVLFPEC--HICHKRFESAKSCKIHLKLLH 163
C T F + L KH R KH + + H+ F++ S + H + H
Sbjct: 250 CNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDH 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,459
Number of Sequences: 5004
Number of extensions: 26172
Number of successful extensions: 94
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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