Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P08
(253 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.12
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 0.66
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 1.2
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 1.5
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 1.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 2.0
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 2.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 24 2.7
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 24 2.7
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 24 3.5
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 24 3.5
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 23 4.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 23 4.7
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 6.2
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 23 6.2
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 23 6.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 23 6.2
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 23 8.2
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 8.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 23 8.2
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 23 8.2
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 28.7 bits (61), Expect = 0.12
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 73 PTAHHQPDRTATPQPQNTGRSR 138
PT + QP RT QPQ TG S+
Sbjct: 457 PTGYMQPQRTGMMQPQRTGFSQ 478
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 76 TAHHQPDRTATPQPQNTG 129
T QP RT QPQ TG
Sbjct: 354 TGFMQPQRTGFVQPQATG 371
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 76 TAHHQPDRTATPQPQNTG 129
T QP RT QPQ TG
Sbjct: 386 TGFMQPQRTGFVQPQATG 403
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 76 TAHHQPDRTATPQPQNTG 129
T QP RT QPQ TG
Sbjct: 402 TGFMQPQRTGFVQPQATG 419
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 76 TAHHQPDRTATPQPQNTG 129
T QP RT QPQ TG
Sbjct: 418 TGFMQPQRTGFVQPQATG 435
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 0.66
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 109 PQPQNTGRSRGNCHCKPGNCIFGPASRKHPNR*PTHHGPPSH 234
P+P ++ R C P F P HP+ P HH P H
Sbjct: 149 PEPLSSNHVRS---CPP----FPPTQHHHPHTRPPHHPPHPH 183
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 179 GPNMQFPGLQWQFPRDRPVF*GCGVAVRSGWWCA-VGSAELTRK*ILR 39
G ++QF + + + +RP+ GC + +G A VG++ + ILR
Sbjct: 440 GGSIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILR 487
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 35 YTLVSTCVLVLRYQPHTTNLIELLPHSLRTPVDPEGTATANRETAY 172
Y V T + + + TNL +++ SL TPV + AN +A+
Sbjct: 214 YDSVMTFYAQIYPKQNMTNLEDIMSLSLLTPVSSKTDENANSSSAF 259
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 49 YLRVSSALPTAHHQPDRTATPQ 114
YLR++ + A +QP+ ATPQ
Sbjct: 73 YLRMNQGMDYAFNQPNPIATPQ 94
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 24.6 bits (51), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 95 IELLPHSLRTPVDPEGTATANRETA 169
IE+LP S +TP + T+T+ T+
Sbjct: 863 IEVLPESQKTPTAVDNTSTSRGSTS 887
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 24.6 bits (51), Expect = 2.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 5 EGKIIGTLLAYTLVSTCVLVLRYQPHTTN 91
E K + LL YT + L+LR+ P TT+
Sbjct: 34 EAKFVYKLLDYTKGNWLSLLLRFLPETTD 62
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 2.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 202 GLDVSLKLARICSFPVCSGSSLGIDRCSEAVG*QFDQVGG 83
G L + R+ + P + + G+D+ ++A+ FD GG
Sbjct: 206 GAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGG 245
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 125 PVDPEGTATANRETAYSGQLQGN 193
PV+ + TA N+E A +L+GN
Sbjct: 69 PVEEDSTAHVNKEEAEKLKLEGN 91
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 23.8 bits (49), Expect = 3.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 129 TGVLRLWGSSSIRLVVCGW 73
T + + W S+S+ V CGW
Sbjct: 9 TSISKNWWSASLVPVACGW 27
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 3.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 176 PNMQFPGLQWQFPRDRPVF*G 114
P F G WQFP D + G
Sbjct: 770 PENAFQGWTWQFPNDLSIMNG 790
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 23.4 bits (48), Expect = 4.7
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Frame = +3
Query: 72 TNRTPPT*SNCYPTASEHRSIPRE-------LPLQTGKLHIRASFKETSKPVTNASWSAE 230
T P NC + EHR IP + +P QT K H S K ++S S
Sbjct: 253 TEYMQPAPPNCTASPFEHRPIPLKRASEDQIIPQQTNKFHKSKSSTALFKSKKDSSSSLN 312
Query: 231 SL 236
+
Sbjct: 313 KM 314
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 107 PHSLRTPVDPEGTATANRETAYSGQLQGN 193
P++ R P GT + +++T S Q+Q N
Sbjct: 847 PNASRAPEPTGGTNSISQDTTQSLQMQSN 875
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 23.0 bits (47), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 195 MFP*SWPEYAVSRFAVAVPSGSTG 124
+FP S+ EY S + P+GS G
Sbjct: 91 IFPYSYTEYQPSTTYTSAPAGSIG 114
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.0 bits (47), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 132 IPRELPLQTGKLHIRASFKETSK 200
I R LP+ GK SF++TSK
Sbjct: 298 IHRPLPVPVGKYERGDSFEDTSK 320
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 23.0 bits (47), Expect = 6.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 110 HSLRTPVDPEGTATANRETAYSGQLQGNIQTGNQR 214
HS P + T++ + + GQL+ NI NQ+
Sbjct: 155 HSNSPSFPPSQSHTSSYDQSPKGQLRDNISVPNQQ 189
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 23.0 bits (47), Expect = 6.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 92 LIELLPHSLRTPVDPEGTATANRETA 169
++++ P +R P + TANR T+
Sbjct: 126 VLKVAPSKIRAPAGNHSSTTANRTTS 151
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 19 RHSSGLHLSIYLRVSSALPTAHHQ 90
R SG H S ++++ LPT H Q
Sbjct: 516 RLPSGNHQSFLQKLNNQLPTKHSQ 539
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 191 FLEAGPNMQFPGLQWQFPRDR 129
+ E P ++FPG+ + + R+R
Sbjct: 75 YKEFDPVLKFPGIHYTYSRER 95
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 22.6 bits (46), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +2
Query: 74 QPHTTNLIELLPHSLRTP--VDPEGT 145
+PH N+ +LP L P VDP T
Sbjct: 100 KPHVKNITSVLPKWLAEPITVDPNTT 125
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 200 FGCFLEAGPNMQ 165
FGC+L AGP+ +
Sbjct: 228 FGCYLAAGPSAE 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,377
Number of Sequences: 5004
Number of extensions: 21425
Number of successful extensions: 80
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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