Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P07
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.23
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 27 0.69
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 26 1.6
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 1.6
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 2.1
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 26 2.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 2.1
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 2.1
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 25 2.8
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 3.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 3.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 4.9
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 4.9
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 4.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 24 6.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 6.4
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 24 6.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 24 8.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.5
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 24 8.5
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 24 8.5
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 8.5
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 24 8.5
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 24 8.5
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.23
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = +1
Query: 82 LKRALMILAASCEFD----KRHNSEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYS 249
+K L I+ ++ E++ +++ ++ERI + +P+ L N E P + +
Sbjct: 1878 MKGLLEIVTSAAEYEQLPIRKYEDIVLERI--HSRLPV------RLSNPNYEDPHTKSF- 1928
Query: 250 IEARALLHAHLSRMRLPPETLECDRRYIVSRCPDLI 357
LL AH SR LPP L D+++I++R +L+
Sbjct: 1929 ----ILLAAHFSRFELPP-GLVIDQKFILTRVHNLL 1959
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 0.69
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 228 LFLIFLTKIRQLT*KHRNFFIVCYSFDNFRIMP 130
L L K+ +LT + RNF C +F N +P
Sbjct: 95 LISFLLAKLFRLTPRQRNFATACITFQNSNSLP 127
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 346 DTGTRCNVGHTRGFLVEAACEKDAHVTKRVLRYCTADKVVVP 221
+T R + H + L KDA +++LRY +VV P
Sbjct: 636 ETLIRLSTAHAKARLSSVVEVKDAKAAEKILRYALFREVVKP 677
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 1.6
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 49 FYFCHKTPSMPLKRALMILAASCEFDKRHNS-EIVERITDNEEVPMLLRELPNLGEKNKE 225
F+ S+ +RA++ + SC F+ +NS E VE+ T+ +E + ++ LP E K+
Sbjct: 283 FHLPSDVHSLDYERAILGMKLSCGFEILYNSKENVEKRTEIDEY-LQIQPLPT-DEDIKK 340
Query: 226 QPL 234
PL
Sbjct: 341 IPL 343
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 136 NSEIVERITDNE-EVPMLLRELPNLGEKNKEQPL 234
NSE + +D+E E LLREL N+ ++ K + +
Sbjct: 153 NSESSDEESDSEDETQQLLRELENIKQERKREQM 186
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 139 SEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEARALLHAHLS 285
S I ER+ + E +P + L G++ + Y +E ++LH L+
Sbjct: 24 SRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLA 72
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 121 FDKRHNSEIVERITDNE--EVPMLLRELPNLGEKNK 222
FDK +N E +ER+T+++ + ML + N+ E+ +
Sbjct: 279 FDKENNDEHLERVTNDKIADASMLQKAENNVSEQER 314
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 258 CFDTVRPTKWLFLIFLTKIRQLT*KHRNFFIVCYS 154
CF +PTKW+ LI TK+ +FF VCY+
Sbjct: 28 CFICYKPTKWV-LITKTKL--------DFFYVCYN 53
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 2.8
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 82 LKRALMILAASCEFDKRHNS---EIVERITDNEEVPMLLRELPNLGEKNKEQPL 234
+K L+ A FDK HNS I++ + N + L LP K + L
Sbjct: 59 MKSMLLTFAGKSNFDKLHNSIIFHILKLMQKNNDTFSALHHLPWFKRKKVDNSL 112
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 3.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 10 EGRTSLLDTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEIVERITDN 168
E T LLDT Y +PSMP + + S +F + NSE+ +++D+
Sbjct: 417 EHSTPLLDTK--YRKRLPHSPSMPSRVEFLPALESSQFHETLNSELSLQLSDD 467
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 127 KRHNSEIVERITDNEEVPMLLREL 198
++ EIV+++ DNEE+ + + EL
Sbjct: 740 EKMRKEIVQQVRDNEEIEVHINEL 763
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 4.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 91 ALMILAASCEFDK---RHNSEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEAR 261
AL +LA + EFD RHN +++ I N+ + L NL P+ + ++A
Sbjct: 1651 ALQLLAEASEFDDLAIRHNEDLIN-IEINKSLKYSAACL-NL-------PMVDAH-VKAF 1700
Query: 262 ALLHAHLSRMRLPPETLECDRRYIVSR 342
L AH++R++LP + D ++ +
Sbjct: 1701 ILTQAHMARLKLPVDDYVTDTSTVLDQ 1727
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +1
Query: 115 CEFDKRHNSEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSI 252
CE R ++ +N++ + LR+L + + + QP+ P+ +
Sbjct: 556 CELPLRILCDVANDNLENDDYVLALRDLLRISKWDPNQPVPAPFDL 601
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 79 PLKRALMILAASCEFDKRHNSEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIE 255
P + L + EFD + E+VE + N +L G NKE+ Y +E
Sbjct: 406 PRDKVLYYSSVLTEFDPKGIQEVVESLRPNNFFAILAAHSIEKGLDNKEKFYGIDYGLE 464
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 256 LRYCTADKVVVPYFSHQDSATHVKA*ELLHCLLFFR 149
L Y T +++ + SH S + + E HC FR
Sbjct: 328 LNYTTIVDIILLHQSHSTSKEWLSSLEQYHCTYLFR 363
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 6.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 22 SLLDTTQ-MYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEIVERIT 162
+L+D+ Q CHKTP +P M+ + F+ R N+ R+T
Sbjct: 1909 NLIDSMQESVCCMCHKTPILP--AICMLCGSVICFNARQNTVSSRRLT 1954
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 7 HEGRTSLLDTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSE 144
H+ RTS DTT + PS+P + ILA S ++H E
Sbjct: 46 HDRRTST-DTTHSRHRYPETPPSLPPPPSPGILATSPAVLQKHQQE 90
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 23.8 bits (49), Expect = 8.5
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 70 PSMPLKRALMILAASCEFDKRHNSEIVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYS 249
P + L + + A + + R+ V + E + ++RE P+L +QP R Y+
Sbjct: 1159 PDLGLHDKIFLDEAKNDKESRYVPSAVHLVRRGEYLLSVVREHPDLFVVKTDQPTKRKYN 1218
Query: 250 IEA 258
+A
Sbjct: 1219 RKA 1221
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 23.8 bits (49), Expect = 8.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 88 RALMILAASCEFDKRHNSEI--VERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEAR 261
+AL+ C HN +I V+ +N VP+LL +L N K Q + R
Sbjct: 60 KALLSSNQLCHAFHYHNKKIRLVDTSLNNLPVPILLPKLINYLLARKSQKSAAEWEEIER 119
Query: 262 ALL 270
ALL
Sbjct: 120 ALL 122
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 43 MYFYFCHKTPSMPLKRAL 96
+YFY K PS+PL + L
Sbjct: 428 LYFYSYAKNPSLPLPKQL 445
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +1
Query: 97 MILAASCEFDKRHNSEIVERITDNEEVPMLLRELPNLGEKNKEQ 228
M+ C + KR + + +NE P+L L N E+
Sbjct: 28 MVYGEECRYVKRVKHDNRAAVQENERYPILYTPLSTSDHDNDEE 71
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 265 LLHAHLSRMRLPPETLE 315
LLH+HL M + P+ LE
Sbjct: 641 LLHSHLQEMHIFPQILE 657
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 98 MRARFKGIDGVLWQK*KYI*VVSSKLVLP 12
+RA +D +LW + ++ V S+LVLP
Sbjct: 618 LRALLASLDTILWPECRWQKVSLSELVLP 646
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 178 PMLLRELPNLGEKNKEQPLCR 240
P+L+R+ +L NKE+ +CR
Sbjct: 37 PVLIRQYRSLRFANKEENICR 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,446
Number of Sequences: 5004
Number of extensions: 31243
Number of successful extensions: 112
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -