Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P07
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1279 + 35427916-35429511 30 0.64
09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028 28 2.0
06_03_0944 + 26202053-26202229,26203788-26204047,26204145-262042... 28 2.0
01_06_0031 + 25760878-25761342 27 3.4
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 27 4.5
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 27 4.5
05_05_0246 + 23591759-23593042 27 4.5
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 27 4.5
11_06_0592 - 25327128-25329566 27 6.0
11_01_0653 - 5285718-5287094 27 6.0
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 27 6.0
08_02_0588 + 19036509-19039235 27 6.0
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 6.0
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 26 7.9
08_02_0593 + 19078264-19078609,19078724-19082256 26 7.9
06_01_0350 + 2534422-2535615 26 7.9
>02_05_1279 + 35427916-35429511
Length = 531
Score = 29.9 bits (64), Expect = 0.64
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 25 LLDTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEIVE 153
L+D + +F+ H+T ++ L L++LAA E+ E+VE
Sbjct: 322 LVDECKTFFFGGHETTALALSWTLLMLAAHPEWQAAVREEVVE 364
>09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028
Length = 153
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 145 IVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEARALLHAHLS 285
I ER+ + E +P + + L G++ + + Y+IE ++LH L+
Sbjct: 102 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148
>06_03_0944 +
26202053-26202229,26203788-26204047,26204145-26204245,
26204512-26204584,26205482-26205581
Length = 236
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 145 IVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEARALLHAHLS 285
I ER+ + E +P + + L G++ + + Y+IE ++LH L+
Sbjct: 130 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 176
>01_06_0031 + 25760878-25761342
Length = 154
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 145 IVERITDNEEVPMLLRELPNLGEKNKEQPLCRPYSIEARALLHAHLS 285
I ER+ + E +P + + L G++ + Y IEA ++LH L+
Sbjct: 102 IKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLA 148
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 244 TADKVVVPYFSHQD-SATHVKA*ELL 170
T DK+++PY HQ SA+H E L
Sbjct: 594 TTDKLIIPYVEHQSPSASHASIFEKL 619
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 181 MLLRELPNLGEKNKEQPLCRPYSIEARAL 267
++LR LP+L ++ + + +CRP+ A+ L
Sbjct: 19 LVLRRLPSLADRVRLRAVCRPWRSNAQLL 47
>05_05_0246 + 23591759-23593042
Length = 427
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 25 LLDTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEIVE 153
++D + ++ H+T ++ LM+LAA E+ R +E++E
Sbjct: 199 VVDNCKNIYFAGHETSAVTATWCLMLLAAHPEWQDRARAEVLE 241
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 256 ARALLHAHLSRMRLPPETLECDRRYIV 336
A ALLH H L P +CD +IV
Sbjct: 387 AVALLHCHACLQPLKPPVFKCDEAHIV 413
>11_06_0592 - 25327128-25329566
Length = 812
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 31 DTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEIVERITDNEEVPMLLRELPNLG 210
D ++ FC+ K L LAA E DK + + +V R +P+ + E P
Sbjct: 244 DVAKLVMIFCYSKLPTHCKSCLQYLAAMGEEDKINRACLVRRWVAEGLLPLRVVEPPLTT 303
Query: 211 EKNKEQPLC 237
+ LC
Sbjct: 304 TMEEAGELC 312
>11_01_0653 - 5285718-5287094
Length = 458
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 229 PLCR-PYSIEARALLHAHLSRMRLPPET 309
PL R P S A A +AHL R+RLP T
Sbjct: 10 PLLRVPSSPHASASYYAHLRRLRLPLST 37
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = +1
Query: 25 LLDTTQMYFYFCHKTPSMPLKRALMILAASCEFDKRHNSEI 147
++D + +F+ H+T ++ L A+M+LA + + ++ +E+
Sbjct: 332 VIDECKTFFFAGHETSALLLTWAIMLLATNPAWQEKARTEV 372
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 202 NLGEKNKEQPLCRPYSIEARALLHA-HLSRMRLPPETLECDRRYIVSRCPDLI 357
N ++ K LCR + RAL+HA +++ LE D+ IV + P I
Sbjct: 696 NANDRRKTMMLCRRFQFIHRALVHAVKQGSLKVLRADLEADK--IVRKLPGFI 746
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 153 FDNFRIMPFVELTGCCQNHESSL 85
F F+ + ++LTGCC H L
Sbjct: 624 FKEFKSLRLLDLTGCCLRHSPDL 646
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 257 HALCYMRIFLACGFHQKP 310
+ L R+F ACG+HQ P
Sbjct: 53 NGLTQNRVFTACGYHQPP 70
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 202 NLGEKNKEQPLCRPYSIEARALLHA 276
N +++K + LCR + RALLHA
Sbjct: 776 NADDRSKIRMLCRRFQFICRALLHA 800
>06_01_0350 + 2534422-2535615
Length = 397
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 166 NEEVPMLLRELPNLGEKNKEQPLCRPYSIEARALLHAHLSRMRLPP 303
+E + ++L LP+ G++ + + +CRP+ AR L R LPP
Sbjct: 17 SELLGLVLLRLPSHGDRVRLRAVCRPWRSSAR------LERKLLPP 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,736
Number of Sequences: 37544
Number of extensions: 192911
Number of successful extensions: 521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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