Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P06
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   185   2e-48
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   0.75 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   3.0  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   3.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.3  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   5.3  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    24   7.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.3  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    24   9.3  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    24   9.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   9.3  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    24   9.3  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  185 bits (451), Expect = 2e-48
 Identities = 86/116 (74%), Positives = 99/116 (85%)
 Frame = +3

Query: 33  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 212
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 213 AQVRFVTGKKILRIMRAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLI 380
            QVRF+TG+KI+RI++A GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLI
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLI 116


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 117 TADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMRAMGLAPDL--PE 290
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 291 DLYYLIKKAVAMRKHLE 341
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 360 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 271
           P PSY+ P  S   Q   +GST L  D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 234 GKKILRIMRAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 359
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 107 PGRDTAAVRQRRLGYTLARCVHTTHI 30
           P R T A R+R L YT ++  H+T +
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSL 578


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 7   GRYSKKPPIWVVCTHLARVYPSRRCRTA---AVSLPG 108
           G Y++   +   C HLA+++PS   RT    A  +PG
Sbjct: 114 GFYTRCKRLHQACQHLAKLHPSEIPRTGDEWAKGIPG 150


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 142 SSNLAKRVLLLPKSVSCSGTLMVLHKSDLLLVKRSCVS*ELWVLLLIYRKICTT 303
           SS   K    L  +V+C  T++ L+  D   VK+  +S    +  L++   CT+
Sbjct: 58  SSKNVKFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVISCSCTIYPLVFLHCCTS 111


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 157 LPSLKICSLTSSAVSFNQVGTLRRYGS 77
           L S  +C+ T+S+  F Q+ +   YGS
Sbjct: 275 LRSFALCNATTSSSLFRQIASYGVYGS 301


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -3

Query: 281 IRSKTHSSHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 120
           ++++     D+    ++ K+ L   +   +  TDLG    L   F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 134 GTDLQTWQKGSYSFPNRCHAQGLSWCCTSQICYW*K 241
           GT     ++G     + C+A G+++  T Q+ YW K
Sbjct: 379 GTGTFCVRRGPEGNKSLCNACGVAYAKTGQLPYWRK 414


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 378 ST*ICCPCPSYYVPNVSSWRQPS*SGSTNL 289
           ST +      YY P+  S  +PS  G TNL
Sbjct: 482 STTLSSTASGYYTPDSLSTPEPSIDGLTNL 511


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 243 ILRIMRAMGLAPDLPEDLYYLIKKAVA 323
           I R+  ++ + P+LP+D+  L+ K+ A
Sbjct: 469 IRRLRESISIIPNLPKDIQKLVIKSYA 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,850
Number of Sequences: 5004
Number of extensions: 33736
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)