Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P06
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   183   4e-47
U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant respons...    29   1.5  
AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related ...    29   1.5  
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    28   2.6  
Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  183 bits (445), Expect = 4e-47
 Identities = 81/116 (69%), Positives = 104/116 (89%)
 Frame = +3

Query: 33  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 212
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 213 AQVRFVTGKKILRIMRAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLI 380
            QVR + G KI RI+++ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLI
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLI 116


>U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant response
           abnormal protein2, isoform b protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -3

Query: 374 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTHS---SHDTQDLFTSNKSDLCNT 207
           PE A L LP    M P+ +     +  ++R   S  TH    S +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 206 MRV 198
           +R+
Sbjct: 82  LRI 84


>AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related
           protein ODR-2 isoform16 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -3

Query: 374 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTHS---SHDTQDLFTSNKSDLCNT 207
           PE A L LP    M P+ +     +  ++R   S  TH    S +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 206 MRV 198
           +R+
Sbjct: 82  LRI 84


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = -3

Query: 278 RSKTHSSHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIISG*FQPGR 99
           R + ++ +++ D  +   +++   + V   + ++   K LF+K +   LN +SG  +PG 
Sbjct: 9   RKRWNAGYESIDTSSQKLTEVVTPITVTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGE 68

Query: 98  DTAAVRQRRLGYT 60
             A +     G T
Sbjct: 69  MVALMGASGAGKT 81


>Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical
           protein F55H12.5 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 338 QMFPHGDSLLDQVVQIFR*IRSKTHSSHDTQDLFTSNKSDLCN 210
           ++  HG +     ++  R +RS T  + D+ DL  ++  +LCN
Sbjct: 240 RLMKHGKAKHTDTIKQIRFMRSNTFDTFDSYDLGINSLIELCN 282


>Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 129 VKEQIFKLGKKGLTPSQIGVMLRDSHG 209
           V+  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


>Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 129 VKEQIFKLGKKGLTPSQIGVMLRDSHG 209
           V+  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,383
Number of Sequences: 27780
Number of extensions: 189936
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)