Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P05
         (270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   0.38 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   0.51 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   4.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         19   8.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   8.2  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 0.38
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 123 QPTLVWVCSSMGKLRSSPMTRATELRPRTLRSPTLSVLSVMQPR 254
           QPTL  +CS  G    S     T   P T  + T+S  + +  R
Sbjct: 74  QPTLRLLCSIAGGTSESQWEDVTGSTPLTFVNDTVSFTTTVSAR 117


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 0.51
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 72  TKETKWQKHQQLVSIWAQPTLVWVCSS 152
           T+  K+ KH+    +W    LVW  S+
Sbjct: 289 TQPIKYAKHKNNRRVWLTILLVWAISA 315


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 12/44 (27%), Positives = 15/44 (34%)
 Frame = +3

Query: 39  YELSTTDYQ*DTKETKWQKHQQLVSIWAQPTLVWVCSSMGKLRS 170
           + LS   Y  D        H  L  +W Q  L W  S    + S
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINS 107


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 33  SSYELSTTDYQ*DTKETKWQKHQQLVSIWA 122
           + Y+L   ++  +    K  K QQ++ IWA
Sbjct: 12  TDYDLEN-EFNINRPRRKLSKKQQMLGIWA 40


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 155 HAGTHPHKSRLC 120
           H G  PHK  +C
Sbjct: 170 HTGERPHKCTVC 181


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 181 VIGDDLNFPMLEHT 140
           +IG D + PM+ H+
Sbjct: 478 IIGKDYSLPMVNHS 491


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 169 DLNFPMLEHTHTRVGC 122
           D N P+L   H RV C
Sbjct: 49  DSNEPLLPLRHRRVTC 64


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 127 LLLCGCVPAWES*DHR 174
           +LL G  P W+   HR
Sbjct: 104 ILLVGYPPFWDEDQHR 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,533
Number of Sequences: 438
Number of extensions: 1147
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)