Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P04
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   1.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   2.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   3.2  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    23   4.3  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           23   5.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   5.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   5.6  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    23   5.6  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    23   7.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    23   7.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    23   7.4  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    23   7.4  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    22   9.8  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    22   9.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +3

Query: 72   LIYEYNFDVFNNFVFLIVIEYNVVIF 149
            ++Y+ ++DV  +F+ L+V+  N+ ++
Sbjct: 2334 IVYKLSYDVIRHFLKLVVLWKNIYVW 2359


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = +3

Query: 84  YNFDVFNNFVFLIVIEYNVVIFV 152
           YN  ++N F+F++++ + V++ +
Sbjct: 182 YNHPLYNIFIFVVIVLHAVLLMI 204


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 188 THNNYKLLIRIHNKYYNIIFD 126
           T + +K L+R+H  +Y + FD
Sbjct: 123 TFDGFKRLLRMHVPFYTLSFD 143



 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 FVFLIVIEYNVVIFVVNSYQ*FVIIMCLHSTVCLSILFKLIY 233
           F  L+ +  ++    ++ +  F I  C H ++CLS++  L++
Sbjct: 45  FALLLHLPCSIYSHTLHFFHHFTIA-CYHYSLCLSLVALLLF 85


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 184 CVFIQLFVFRFYSNLYTNKFP 246
           CV + L +FR Y  LY  + P
Sbjct: 48  CVIVCLILFRRYCTLYPPRVP 68


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 60  CM*RLIYEYNFDVFNNFVFLIVIEYN 137
           CM   IY  N  ++ N +  IV  YN
Sbjct: 275 CMLSFIYFENVALYTNLLLAIVFVYN 300


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/33 (21%), Positives = 16/33 (48%)
 Frame = -3

Query: 140 NIIFDXXXXXXXXXXXXXIFVNQSLHTHTRNYL 42
           N++F+              F+ ++++ H RNY+
Sbjct: 752 NVLFEVLFTLVRIMGPFTPFITENIYQHLRNYM 784


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 72   VFTYTYTKLFTIDINNEMIINASC 1
            +F YTY  LF +   +  +I A C
Sbjct: 1121 IFDYTYVMLFNLLFTSLPVIIAGC 1144


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/49 (18%), Positives = 26/49 (53%)
 Frame = +3

Query: 84  YNFDVFNNFVFLIVIEYNVVIFVVNSYQ*FVIIMCLHSTVCLSILFKLI 230
           YNF ++  ++ ++ I   +++ +VN +   ++++    T+   +L   I
Sbjct: 21  YNFSIYAQWLGILSIFLCIILGIVNLFHVTLVVLFSALTIIEGVLLIFI 69


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 84  YNFDVFNNFVFLIVIEYNVVIFVVNS 161
           Y+F+ F+N     +I++ + IF  N+
Sbjct: 337 YDFETFSNSYSSTIIDFPLGIFTTNA 362


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 238 YLYISLNKIERQTVE*RHIIITNY*YEFTTNITTLYSITIKNTK 107
           YLYIS N   RQ      III  Y +    NI    ++   + K
Sbjct: 775 YLYISFNYKTRQLWRNLAIIIGYYAFLVFVNIVASETLNFNDLK 818


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 84  YNFDVFNNFVFLIVIEYNVV 143
           ++F +FN FV + V  YN V
Sbjct: 458 FSFFIFNRFVLVYVPAYNGV 477


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 87 YIRKSVFTYTYTKLFTID 34
          ++R+  ++  YTKLF ID
Sbjct: 14 FVRQYFYSGNYTKLFEID 31


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 190 FIQLFVFRFYSNLYTNK 240
           + Q FV R+YS+L TN+
Sbjct: 7   YAQEFVQRYYSSLDTNR 23


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 177 LQIIDTNSQQILQHY 133
           LQI D++SQ ILQ++
Sbjct: 96  LQIEDSSSQNILQYF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,248
Number of Sequences: 5004
Number of extensions: 13181
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)