Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P04
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    27   2.3  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF016657-9|AAB93654.2|  289|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    25   5.4  
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 87  NFDVFNNFVFLIVIEYNVVIFVVN 158
           N D F  F+FL  + Y V+++V+N
Sbjct: 175 NVDDFGFFIFLFSVGYLVLLYVIN 198


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 168 IDTNSQQILQHYIRLQLKIQNY*KHQ 91
           +    QQ++QH ++ QL++Q + +HQ
Sbjct: 832 LQLQQQQLMQHQLQQQLQMQQHQQHQ 857


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 168  IDTNSQQILQHYIRLQLKIQNY*KHQ 91
            +    QQ++QH ++ QL++Q + +HQ
Sbjct: 2211 LQLQQQQLMQHQLQQQLQMQQHQQHQ 2236


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 144 IFVVNSYQ*FVIIMCLHSTVCLSILFKLIY 233
           +F+V S+    I    HS+VC + ++K +Y
Sbjct: 600 VFLVRSFSPLTIFYRFHSSVCFAEIWKNVY 629


>AF016657-9|AAB93654.2|  289|Caenorhabditis elegans Hypothetical
           protein C16C4.8 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 10  VNDHFIVDINRK*FRVCVCKD*FTNIILMFSIILYF 117
           VND  I++   K  ++  C++  T  +L+FS+  YF
Sbjct: 254 VNDSIIIEARVKIIKMTGCEEDSTFSLLLFSLSQYF 289


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 111 QNY*KHQNYIRKSVFTYTYTKLFTI 37
           QNY KHQNY     F  T+    TI
Sbjct: 469 QNYVKHQNYSTPVAFDKTFNLTSTI 493


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 179 YYVSSFNCLSFDFIQTYIQI 238
           YY +  +C +FDF+Q ++++
Sbjct: 676 YYEAPGDCANFDFVQPFLEL 695


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 179 YYVSSFNCLSFDFIQTYIQI 238
           YY +  +C +FDF+Q ++++
Sbjct: 676 YYEAPGDCANFDFVQPFLEL 695


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 160 EFTTNITTLYSITIKNTKLLKTS 92
           EFTT  TT+   T+ +T  LKT+
Sbjct: 374 EFTTENTTVIGTTVADTTTLKTT 396


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 81  RKSVFTYTYTKLFTIDINNEMIINAS 4
           R +VF  T T  + +DINN+ II  S
Sbjct: 255 RATVFCDTTTLYYRLDINNDEIIGFS 280


>Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical
           protein ZC410.2 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = -2

Query: 126 LQLKIQNY*KHQN-YIRKSVFTYTYTKLFT------IDINNEMIINAS 4
           L+L+++N   H N Y  +   TY Y K FT      +DI +++++N+S
Sbjct: 91  LELEVENIGAHLNAYTSRESTTY-YAKCFTEKLDQSVDILSDILLNSS 137


>Z19157-3|CAA79566.3|  395|Caenorhabditis elegans Hypothetical
           protein ZC84.4 protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 90  FDVFNNFVFLIVIEYNVVIFVVNSYQ*FVIIMCLHS---TVCLSILF 221
           F  +  +V    I +NVV FV+N++  +V+   L +    V  SILF
Sbjct: 22  FQGYRTYVASTYISFNVVGFVINAWVLYVVAPLLFAPAIKVPKSILF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,512,385
Number of Sequences: 27780
Number of extensions: 69085
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)