Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P04
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    20   3.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   5.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   5.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    19   6.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    19   6.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    19   6.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = -2

Query: 216 KSKDKQLNEDT**LQIIDTNSQQILQHYIRLQLKIQNY*KHQNYIRKSVFTYTYTKLFTI 37
           +S+DK+  E +   +II + S   + +       I NY  + NY +K  +   Y +   +
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISN-------ISNYNNNNNYNKKLYYNINYIEQIPV 118

Query: 36  DI 31
            +
Sbjct: 119 PV 120


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 177 LQIIDTNSQQILQHYIRLQLKIQNY--*KHQ 91
           L  I+   +   +HY+  +  +QNY   KHQ
Sbjct: 563 LSTIEDADKNQCRHYLDAKSSVQNYSLAKHQ 593


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -2

Query: 114 IQNY*KHQNYIRKSVFTYTYTKLFTIDI 31
           I NY  + NY +K  +   Y +   + +
Sbjct: 331 ISNYNNNNNYNKKLYYNINYIEQIPVPV 358


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = -2

Query: 216 KSKDKQLNEDT**LQIIDTNSQQILQHYIRLQLKIQNY*KHQNYIRKSVFTYTYTKLFTI 37
           +S+DK+  E +   +II + S   + +       I NY    NY +K  +   Y +   +
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISN-------ISNYNNDNNYNKKLYYNINYIEQIPV 118

Query: 36  DI 31
            +
Sbjct: 119 PV 120


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 78  YEYNFDVFNNFVFLIVIEYNVV 143
           Y YN + +NN  +   + YN++
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 78  YEYNFDVFNNFVFLIVIEYNVV 143
           Y YN + +NN  +   + YN++
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNII 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,339
Number of Sequences: 438
Number of extensions: 1566
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)