Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P03
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   1.3  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    25   1.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   1.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   3.1  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    24   3.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   4.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   4.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   5.4  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    22   9.5  

>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 129 FHSVQLYLQHCRYTYHSH 76
           FH   LY   CRYT++ H
Sbjct: 88  FHLSFLYNPFCRYTFYKH 105


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 129 FHSVQLYLQHCRYTYHSHQLQ 67
           FHS  +Y + C   YH+ +LQ
Sbjct: 77  FHSSSIYNKRCLMAYHNLRLQ 97


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 131 CFILSSFIYSIADTLTIV 78
           CF++S    SI DTLT++
Sbjct: 388 CFVVSCIFVSIFDTLTVL 405


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 12  TTSRFSVNEISGLLTFDRVEAGDY 83
           T SR+S     GLL  D+   GDY
Sbjct: 102 TVSRYSETLDKGLLNGDKTTKGDY 125


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 125 ILSSFIYSIADTLTIVTSFNSIKC*ESRDFVNTES*CR 12
           I+ SFI + A ++ ++TSF S    +  D ++ ++ C+
Sbjct: 71  IVDSFIDNEAGSVYLITSFKSFVLSDVMDEISIDTKCK 108


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 94  IHLP*SPASTLSNVKSPEISLTLNLDVVAL 5
           +H+P    +T SN+    +   +NL+ VAL
Sbjct: 148 VHIPGLEDATSSNMSPNSVQNNMNLNTVAL 177


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 60   DRVEAGDYGKCICNAVNKAGQNETA 134
            + + +GDYG+ I NA N A   + A
Sbjct: 1580 ENMNSGDYGQQILNASNIAAVQQKA 1604


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 21  RFSVNEISGLLTFDRVEAGDYGKCICNAVNKAGQNETAI 137
           RF+V E   +L   + E  ++ +CI   V  A     A+
Sbjct: 64  RFNVGEQEAILLLKKGEDNEFDRCIQALVALASSKPVAV 102


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 75  GDYGKCICNAVNK 113
           GD G+C+ N +NK
Sbjct: 61  GDGGRCVWNVLNK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,032
Number of Sequences: 5004
Number of extensions: 6325
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)