Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P03
(163 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881... 29 0.67
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 1.2
12_02_0266 - 16582912-16584918,16585041-16585229 27 2.1
11_01_0379 + 2884428-2884976,2885500-2885583,2886141-2886155 27 2.7
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 26 3.6
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 26 4.7
05_03_0660 + 16724361-16724684,16725085-16725300 26 4.7
10_08_0292 + 16560093-16560553,16560754-16560913 25 6.3
07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754... 25 8.3
>07_03_0590 +
19786960-19787136,19787198-19787272,19787676-19788173,
19788605-19788970,19788995-19789009
Length = 376
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 149 YFNFYSCFILSSFIYSIADTLTIVTSFNSIKC 54
YF C+ +S + A TLT + SFN+++C
Sbjct: 112 YFKNCGCYGMSWNLTITAQTLTCMVSFNALRC 143
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 12 TTSRFSVNEISGLLTFDRVEAGDYGKCICNA 104
+TSR +++E+ LLT +EA D+ ICN+
Sbjct: 848 STSR-AISEVHSLLTSGGIEATDFDAFICNS 877
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 137 YSCFILSSFIYSIADTLTIVTSF 69
Y C I SSF+Y I D + I+T +
Sbjct: 33 YPCCIQSSFLYLIVDLIEILTVY 55
>11_01_0379 + 2884428-2884976,2885500-2885583,2886141-2886155
Length = 215
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 146 FNFYSCFILSSFIYSIADTLTIVTSFNSIKC 54
F+ +C + +I S+++T+T V +F I C
Sbjct: 43 FSLLACTYMYFWIISLSETITKVATFTGITC 73
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 27 SVNEISGLLTFDRVEAGDYGKCICNAVNKAGQNETAIEVEVLV 155
S+ +I L+F+R +G +C+A + +GQ + V++LV
Sbjct: 161 SIGKIDNFLSFERGFL--HGDIVCSAADPSGQLGRVVGVDMLV 201
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 21 RFSVNEISGLLTFDRVEAGDYGKCICNAVNKAGQNETAIEVEV 149
+F+++ I GL+ + + GDY + ++ G+N+ A E +
Sbjct: 1827 KFNIDIIIGLIRSELINLGDYNVHLAKIID-GGRNKAATEFAI 1868
>05_03_0660 + 16724361-16724684,16725085-16725300
Length = 179
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 63 RVEAGDYGKCICNAVNKAG 119
RVE GD IC AV KAG
Sbjct: 114 RVEKGDPRDVICGAVEKAG 132
>10_08_0292 + 16560093-16560553,16560754-16560913
Length = 206
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 78 DYGKCICNAVNKAGQN 125
++ KC+C +V K GQN
Sbjct: 174 EHSKCVCVSVQKKGQN 189
>07_03_0589 +
19773904-19774032,19774224-19774298,19774947-19775444,
19775898-19776263,19776636-19776727,19776826-19776872,
19776953-19777014,19778461-19778498,19779354-19779366
Length = 439
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 146 FNFYSCFILSSFIYSIADTLTIVTSFNSIKC 54
F + + +S + A TLT + SFNS++C
Sbjct: 97 FKNWKGYTMSWNLTITAQTLTCMVSFNSLRC 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,755
Number of Sequences: 37544
Number of extensions: 34068
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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