Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_P02
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    53   6e-09
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    24   3.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    23   4.0  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   4.0  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    23   5.3  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    22   9.3  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    22   9.3  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    22   9.3  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    22   9.3  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    22   9.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 52.8 bits (121), Expect = 6e-09
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +3

Query: 15  VKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSI 173
           V  +YD G +F+P ILD+  EDL    L+  + + A+SL   YPT+ S  HS+
Sbjct: 187 VLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSV 239


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 107 HSSKELLAKVLRLDVENCR 51
           H  +E+  K+L LD +NC+
Sbjct: 60  HGQQEIHNKILDLDFQNCK 78


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 2    HEACCQTGVRLRYHLRAGNSRH 67
            H+A C  G+    HLR+G   H
Sbjct: 1038 HQAACAKGIGEYVHLRSGMPCH 1059


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 110  QRGRALVVHRVPDGRVCA 163
            +RG++LVV  + +GR CA
Sbjct: 2068 RRGQSLVVWGIQEGRQCA 2085


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 76  SGLMSRIAGAKMVPESY 26
           SGL+ R+A ++M PES+
Sbjct: 324 SGLVCRLAKSQMKPESF 340


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 33  SGTIFAPAILDIKP 74
           S T++ PAILD+ P
Sbjct: 145 SSTVYYPAILDLLP 158


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 69  KPEDLREKFLAGVANVAALSLSIGY 143
           K +  + +FL  V+ VAA SL+ GY
Sbjct: 45  KTDVWKGRFLPIVSGVAAASLTAGY 69


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 97  LLEWPTWPRSRCPSG 141
           LL +P W R   PSG
Sbjct: 152 LLHYPAWVRRTSPSG 166


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +2

Query: 56  NSRHQAGGPSREVPCWSGQRGRALVVHRVPDGRVCASF 169
           N+R +   P+     W+ +RG +++   V + R+ ++F
Sbjct: 242 NARGEGITPANIAISWAVKRGTSVLPKSVNESRIVSNF 279


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 39  TIFAPAILDIKPEDLREKFLAGV 107
           TIF P I  ++PE+L    L GV
Sbjct: 130 TIFLPLIGLVEPEELHPGDLIGV 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,669
Number of Sequences: 5004
Number of extensions: 9683
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)