Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_P02
(181 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 75 1e-14
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 75 1e-14
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 73 2e-14
02_03_0041 + 14275897-14276370 29 0.53
04_04_0095 - 22775340-22776017 28 0.92
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 1.2
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 1.2
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 2.1
10_06_0088 - 10538037-10539463,10539696-10539789 26 3.7
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 26 3.7
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 26 4.9
08_02_1406 - 26854845-26855606 26 4.9
08_01_0799 + 7734031-7735102,7735453-7735475 26 4.9
03_02_0265 + 6974432-6974665 26 4.9
02_02_0310 - 8842286-8843314 25 8.6
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 74.5 bits (175), Expect = 1e-14
Identities = 31/53 (58%), Positives = 44/53 (83%)
Frame = +3
Query: 9 LVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPH 167
LV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+APH
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 74.5 bits (175), Expect = 1e-14
Identities = 31/53 (58%), Positives = 44/53 (83%)
Frame = +3
Query: 9 LVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPH 167
LV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+APH
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 73.3 bits (172), Expect = 2e-14
Identities = 30/53 (56%), Positives = 44/53 (83%)
Frame = +3
Query: 9 LVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPH 167
LV+ VYDSG++F+P +LD+ +DL EKF +GV+ VA++SL+I YPT+A+APH
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>02_03_0041 + 14275897-14276370
Length = 157
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 160 ADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 32
A+ G P+ E AT A RR+SG + +AG +PE
Sbjct: 88 AEEEDGVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 0.92
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 23 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 109
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 65 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 154
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 109 PTWPRSRCPSGTRRSRL 159
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 44 LRAGNSRHQAGGPSREVPCWSGQRGRAL----VVHRVPDGRVCA 163
+ AG R + GG P W G R RA+ + VP GR A
Sbjct: 7 VEAGRRRRRGGGSDPPSPMWGGGRRRAVSRRGKLVAVPVGRAAA 50
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 27 YDSGTIFAPAIL---DIKPEDLREKFLAGVANVAAL--SLSIG 140
YD+G + + D+K D + + LAG+ NV AL SL+ G
Sbjct: 31 YDTGVMSGAMLFIKEDLKTNDTQVQVLAGILNVCALVGSLTAG 73
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 33 SGTIFAPAILDIKP-EDLREKFLA 101
SGT F P I+ +KP ED+ K +A
Sbjct: 166 SGTSFTPHIITVKPNEDVASKIMA 189
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 104 SSKELLAKVLRLDVENCRREDGTGVVHLFDN 12
+ K LL K++RLDV+N R+ L+ N
Sbjct: 408 NKKSLLGKIMRLDVDNPPRQSEIANQSLWGN 438
>08_02_1406 - 26854845-26855606
Length = 253
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 2 HEACCQTGVRLRYHLRAGNSRHQAGGPSRE 91
H AC + G R H R GN QAG PS +
Sbjct: 111 HLACGRGGFRA--HPRCGNLPPQAGAPSHQ 138
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 9 LVVKQVYDSGTIFAPAILDIKPEDLREKF 95
++VK+ S T+ A ++++ P DL E F
Sbjct: 153 VIVKESMASNTVKAHELINVPPSDLSENF 181
>03_02_0265 + 6974432-6974665
Length = 77
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 154 ATVGYPMDNESAATLATPARNFSRRSS 74
A + +P D AT TP R RRSS
Sbjct: 15 ARIAFPCDGGRQATSRTPTRQRRRRSS 41
>02_02_0310 - 8842286-8843314
Length = 342
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 14 CQTGVRLRYHLRAGNSRHQAGGPSRE 91
C+ R R+H+R G RH G +E
Sbjct: 96 CRYHCRYRHHMRHGGHRHGEGFHGKE 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,270,494
Number of Sequences: 37544
Number of extensions: 85490
Number of successful extensions: 336
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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