Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O23
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 34 0.009
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 0.32
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 28 0.74
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 0.74
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 1.7
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 27 1.7
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.7
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 26 2.3
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 3.0
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 3.0
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 4.0
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 4.0
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 4.0
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 4.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 5.2
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 6.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.9
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 6.9
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 24 9.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 24 9.1
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 34.3 bits (75), Expect = 0.009
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 196 DVKFITSEALDQHMKLSPR-HNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKT 372
+V+ I ++ + K SP N+DS NSR ++ + KE+ DL+Q + H K+
Sbjct: 115 EVEQIETQEGGDNAKGSPSSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKS 174
Query: 373 DTSISCEQCEMQLPD 417
D S + L D
Sbjct: 175 DNLDSESADDSDLAD 189
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 0.32
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 193 CDVKFITSEALDQHMKLSPRHNRDSSENSRKR-KRAPRNIRGRSK 324
C + T E L+ ++LSP +RDS S K A R + G S+
Sbjct: 216 CKEEVSTYEGLNSQIELSPVKSRDSQNKSAKNLSTAYRTVSGESR 260
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 0.74
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 163 VPENGPVCAQCDVKFITSEALDQHMKLSPRHNRDSSENSRKRKRAPRNIRGRSK 324
V G V A D S A + K + SSE K +P N+ G +
Sbjct: 129 VENEGDVAAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSGEER 182
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 0.74
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 109 CL*KNDRKVHTRSPMDALFVYDSCRSKT-LRNSPRPL 2
CL +ND V +DA ++YD+ R ++ LR RPL
Sbjct: 228 CLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRPL 264
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 211 TSEALDQHMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTSISC 390
+S A +Q S + + SSE++ + + R SK +TD + KS ++ C
Sbjct: 430 SSNANNQSSPTSSINGKASSESANGTSYSKGSSRRNSKNETDEEKRKSFLERNRQAALKC 489
Query: 391 EQCEMQ 408
Q + Q
Sbjct: 490 RQRKKQ 495
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 1.7
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +1
Query: 22 VKFSTYMSHIRIKHPSDFVCELCGHSFISTKGLCLHKKLKHRFNE-RPVPENGPVCAQCD 198
+K Y RI PS L G S + + L ++L+ + NE R + +Q
Sbjct: 56 MKSKWYSLGKRISQPS--YARLVGPSRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAK 113
Query: 199 VKFITSEALDQHMKLSPRHNRDSSENSRKRKRAP-RNIRGRSKEKTDL 339
+ +E LD+ + P ++++ + +K KRA ++ R S + DL
Sbjct: 114 RE---TELLDEILPKEPAGSKEAMQQKKKEKRAALKHYREASDNEEDL 158
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 1.7
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 31 STYMSHIRIKHPSDFVCEL--CGHS-FISTKGLCLHKKLKHRFNERPVPENGPVCAQCDV 201
++ + HI + P + CE C + T L L+ E+P + P +CD
Sbjct: 60 NSILDHIGNRRPK-YTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVP---ECDR 115
Query: 202 KFITSEALDQHMK 240
F S+AL +HM+
Sbjct: 116 SFTRSDALAKHMR 128
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 272 RIREKESAHLEIFVEEVKRRRIYYRRNHTDIVKRTRLFPVS 394
+++EK LEI++E KR + + T+ V++ L+ ++
Sbjct: 3 KLKEKGFVKLEIYLENKKRLHSIFLKEDTEDVEKKSLYLIN 43
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 73 FVCELCGHSFISTKGLCLHKKLKHRFNERPVPENGPVCAQCDVKFITSEALDQHMK 240
F C+ C F + L HK + P+P C C++K + L +H++
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSK--AEPIP-----CPYCEIKCKRKDLLKRHIQ 79
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 407 CISHCSQEIDVSVLQCRCDFSCNKSV 330
C+SHC ++ + L+ DFS N V
Sbjct: 745 CVSHCIAKLQKTKLKSLTDFSVNPRV 770
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 232 HMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTS 381
H K PR R S NS + + I S EK + K+H + KTD S
Sbjct: 81 HNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRSESKNHSYSKTDIS 130
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 232 HMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTS 381
H K PR R S NS + + I S EK + K+H + KTD S
Sbjct: 81 HNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRSESKNHSYSKTDIS 130
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 232 HMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTS 381
H K PR R S NS + + I S EK + K+H + KTD S
Sbjct: 81 HNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRSESKNHSYSKTDIS 130
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 232 HMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTS 381
H K PR R S NS + + I S EK + K+H + KTD S
Sbjct: 81 HNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRSESKNHSYSKTDIS 130
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 73 FVCELCGHSFISTKGLCLHKKLKHR 147
F C+ C F+ GL HK+ H+
Sbjct: 139 FRCDKCDMMFVKQSGLTNHKRTYHQ 163
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 132 LVQTETLRAYERMTAKFTHEVRWMLYSYMTHVGRK 28
++ TE LRA ++ HE+ W+++ + ++ K
Sbjct: 212 IMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDK 246
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 6.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 211 TSEALDQHMKLSPRHNRDSSENSRKRKRAPRNIRGRSKEKTDLLQEKSHRHCKTDTSIS 387
TS ++ K+ P H R +S RKR ++ K+D +KS K+ S S
Sbjct: 56 TSPIINVESKI-PFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSSNSRKSIRSQS 113
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 132 LVQTETLRAYERMTA--KFTHEVRWMLYSYMTHVGRKLYETLL 10
+++ R +ER+ F H++ W Y+T G K+ + +L
Sbjct: 342 MIRFAVQRPFERVQQIDDFVHQMDWDTDPYLTQYGMKIQKKML 384
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 238 KLSPRHNRDSSENSRKR-KRAPRNIRGRSKEKTDLLQEKSHRHCK 369
K + + S E S K ++AP+ + G KEK + ++K + K
Sbjct: 217 KKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKK 261
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 24.2 bits (50), Expect = 9.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +1
Query: 94 HSFISTKGLCLHKKLKHRFNE----RPVPENGPVCAQCDVKFITSEALDQHMKLSPRHNR 261
H F+ST K+ FN+ +P+PE+ + S ++ S +
Sbjct: 790 HLFVSTNSEL--KQQLSEFNDEKDTQPLPEHTTSYPSTQISLAPSIHVEGLETYSSSERK 847
Query: 262 DSSENSRKRKRAP 300
DSS + RKR P
Sbjct: 848 DSSNKYKSRKRNP 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,000
Number of Sequences: 5004
Number of extensions: 36453
Number of successful extensions: 135
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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