Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O22
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   0.43 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   7.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   7.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 162 ITRWRLYMSEIYTRTSQRPCC 224
           +TR R ++  ++TR S+ P C
Sbjct: 15  LTRLRRHIQNVHTRPSKEPIC 35


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 128 SKIFKMNPGPPNYPMASL 181
           +KIF   PG  N+ MA+L
Sbjct: 298 AKIFPPTPGSFNFSMAAL 315


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 131 KIFKMNPGPPNYP 169
           K  + NPGPP  P
Sbjct: 326 KTARENPGPPGVP 338


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 131 KIFKMNPGPPNYP 169
           K  + NPGPP  P
Sbjct: 326 KTARENPGPPGVP 338


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 131 KIFKMNPGPPNYP 169
           K  + NPGPP  P
Sbjct: 265 KTARENPGPPGVP 277


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 248 DQQKKIFQTTW 216
           ++QKK+ Q TW
Sbjct: 26  ERQKKLVQNTW 36


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 248 DQQKKIFQTTW 216
           ++QKK+ Q TW
Sbjct: 26  ERQKKLVQNTW 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,983
Number of Sequences: 438
Number of extensions: 1878
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)