Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O21
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   156   2e-39
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   4.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.2  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   9.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    24   9.1  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    24   9.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  156 bits (378), Expect = 2e-39
 Identities = 67/93 (72%), Positives = 86/93 (92%)
 Frame = +3

Query: 165 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 344
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 345 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 443
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KE
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKE 119


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 168 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 290
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 156 HGRARVRDHDHVGRHD--LCRHHGIQSRRGNRHVHRLELRPPLLNDQCSRTASC 1
           H R   R H++V       C     +S   NRHV ++ L+   L+++    ASC
Sbjct: 42  HLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLNASC 95


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 74  PRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPER 181
           PRR   P   +R+W+P     R R R   ++GR +R
Sbjct: 78  PRR---PVEHERNWQPELKHGRERFRERDYEGRRDR 110


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +3

Query: 279 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 410
           E    F G  +  E + ++P       G  TRF   V   D NG
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENG 421


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 98  WRQRSWRPTWSWSRTRARPWPWQGR 172
           W++  W   WS SR   R + W  R
Sbjct: 61  WKRDLWSIWWSLSRKATRFYRWLSR 85


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 252 GKCSQACRFCLHGQGDQAW 196
           G CSQ    C   QGD  W
Sbjct: 271 GSCSQYFPLCTISQGDDLW 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,082
Number of Sequences: 5004
Number of extensions: 27757
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)