Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O21
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   140   3e-34
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   2.7  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      28   2.7  
AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine r...    28   3.5  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    27   4.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  140 bits (340), Expect = 3e-34
 Identities = 71/92 (77%), Positives = 76/92 (82%)
 Frame = +3

Query: 168 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 347
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 348 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 443
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKE
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKE 142


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 162 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 49
           HGH      DH H   HD   HHG  S   + H H  E
Sbjct: 99  HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 162 HGHGRARVRDHDHVGRHDLCR-HHGIQSRRGNRHVH 58
           H HG A   DH H   H     HHG        H H
Sbjct: 76  HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHH 111


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 335  ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 430
            +CTE DA ++     G C +    W+ W  CE
Sbjct: 934  SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 335  ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 430
            +CTE DA ++     G C +    W+ W  CE
Sbjct: 934  SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 162 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 58
           HGH       H H G H     HHG     G  H H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGH 551



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 162 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 64
           H HG   V  H H G H    HHG     G  H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 162 HGHGRARVRDHDHVGRHDLCRHHG 91
           HGHG      H H G H +  HHG
Sbjct: 593 HGHGHHAPAHHGHHGEHGV--HHG 614


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 335  ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 430
            +CTE DA ++     G C +    W+ W  CE
Sbjct: 934  SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965


>AC006617-12|AAF39774.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 67 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 441 PCCTSHPNQCVHCYH 397
           PC    PN C+HCYH
Sbjct: 80  PCKYIGPNFCLHCYH 94


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 59  WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 160
           W W     L   WW         +WSR  A  WP
Sbjct: 76  WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 197
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 196 VTGT 185
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 197
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 196 VTGT 185
            + T
Sbjct: 582 QSNT 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,885,022
Number of Sequences: 27780
Number of extensions: 165374
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)