Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O18
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   4.7  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    24   6.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   8.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.2  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    24   8.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   8.2  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    24   8.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    24   8.2  

>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 221 GREPGYNGGSSPAFR 265
           G+E G+NGG  PA R
Sbjct: 355 GQEQGFNGGEDPANR 369


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 242 GGSSPAFRNIADISANKRRYSSDANKYLV 328
           GG+SP+F     IS+N   ++ D ++ ++
Sbjct: 161 GGASPSFEEALQISSNILEHAKDYDRIVL 189


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 201  SSYRLEAVGSPATTEAAHQPSGTLLTYLQINVGIQVMLTSIWFSSK 338
            +SY +E V  P TT  + Q +   ++ LQ+++ +  +  +IW + K
Sbjct: 1127 TSY-IEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPK 1171


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 338 LTGKPDTC*HHLNTDVYLQICQQCSGRLVSCLRCSRAPDRFQSITRSRRRSVPSCATPC 162
           + GK  +C H      +L  C  CS  L    RC+ A +   +  + +   +P+C   C
Sbjct: 478 ICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCT-ANEVQVTCEQLQNGFIPTCERLC 535


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 168 AVFRRA*QSEPHYTDYSRWTPDRE 97
           ++FR+  +  P++ DY +WT + E
Sbjct: 149 SLFRKNKKLPPNFFDYFQWTGEEE 172


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 57   AFLHLYTGCG*WVVRGLVSISSSQCSVARSATLA 158
            AF  L +    WVV  L+   +SQC+    A LA
Sbjct: 1052 AFPWLKSPLAKWVVNSLLDYYASQCNTQMLAMLA 1085


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 260 RLVSCLRCSRAPDRFQSITR-SRRRSVPSCATPCFGERSRASHTTL 126
           + V C+ CSRA  + ++I R + R  V + A     E S  S  T+
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTI 64


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 154 SPKHGV---AHEGTDRRRDLVIDWKRSGARLQRRQLTSLPEH 270
           SP+H      H GT     L ++  +     ++RQL   PEH
Sbjct: 52  SPQHSTENQGHTGTSDTSSLEMELSKLHPESKQRQLPHSPEH 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,634
Number of Sequences: 5004
Number of extensions: 22443
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)