Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O18
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 30 0.63
05_01_0151 - 1001851-1001898,1002227-1002311,1003064-1003225,100... 29 0.83
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 28 2.5
10_08_0627 - 19380432-19381126,19381240-19381597 27 3.4
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 27 4.4
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 27 4.4
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 27 5.9
01_05_0083 - 17987239-17987317,17988412-17988530,17989195-179893... 27 5.9
01_01_0992 + 7855491-7856236,7856334-7856337 27 5.9
11_01_0506 - 3910532-3911335 26 7.7
01_01_0974 + 7678211-7678276,7678974-7679063,7679144-7679255,767... 26 7.7
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 29.9 bits (64), Expect = 0.63
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 188 SVPSCATPCFGERSRASHTTLTTRDGHQTANHPLTAAG 75
S+ S A G RS +S +++TTR ++N PL AAG
Sbjct: 59 SMSSAAGHHSGMRSSSSMSSITTRSSSSSSNLPLGAAG 96
>05_01_0151 -
1001851-1001898,1002227-1002311,1003064-1003225,
1003537-1003672,1004546-1004727,1005599-1005706,
1006133-1006200,1006284-1006292
Length = 265
Score = 29.5 bits (63), Expect = 0.83
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 257 LVSCLRCSRAPDRFQSITRSRRRSVPSCATPCFG-ERSRASHTTLTTRDG 111
+V+ RA + Q + R+V C+TPC G RS A+ TTR G
Sbjct: 92 VVTAPETERAANYNQQFSTRMGRTVVQCSTPCGGLNRSMATINRETTRRG 141
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 236 SRAPDRFQSITRSRRRSVPSCATPCFGERSRASHTTL 126
SR+P R +S +RSR RS A+P + + R H L
Sbjct: 68 SRSPRRGRSRSRSRSRSRGRSASPRYPDGKRRRHNDL 104
>10_08_0627 - 19380432-19381126,19381240-19381597
Length = 350
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 33 SVAIVVARAFLHLYTGCG*WVVRGLVSISSSQCSVARSATLAE 161
SVA+ VARA +L+ C VV G V S+ A SA L +
Sbjct: 155 SVALQVARALEYLHDRCEPAVVHGDVKASNVLLDEAMSAKLCD 197
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 221 RFQSITRSRRRSVPSCATPCFGERSRASHTT 129
R++ + R +PSCA C G+ + +S T+
Sbjct: 79 RYRDVAEMLRDYIPSCAKTCSGDDTLSSSTS 109
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 324 RYLLASLEYRRLFADMS 274
R+LLAS ++RRLF+D S
Sbjct: 71 RFLLASRQFRRLFSDKS 87
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 94 WFAVWCPSRVVSVVWLAL 147
W VW P +V+ V WL L
Sbjct: 35 WIPVWYPVKVLFVAWLVL 52
>01_05_0083 -
17987239-17987317,17988412-17988530,17989195-17989304,
17989422-17989617
Length = 167
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 109 CPSRVVSVVWLALLRSPKHGVAHEGTDRRRDLVIDWKRSGARLQRRQLTSLPEHC*HICK 288
C V+V + + PK + + + DL+I S +QR L S+ +C H K
Sbjct: 98 CAQHGVAVETMIKVGDPKEMICQAAEESKVDLLIVGSHSRGPVQRLFLGSVSNYCMHHSK 157
>01_01_0992 + 7855491-7856236,7856334-7856337
Length = 249
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 260 RLVSCLRCSRAPDRFQSITRSRRRSVPSCATPCFGERSRASHTTL 126
R VSCLR A R ++ R+ +C G R +S TTL
Sbjct: 89 REVSCLRRDNAALRAENAALRRQADQCACCAGAAGVRHASSPTTL 133
>11_01_0506 - 3910532-3911335
Length = 267
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 182 PSCATPCFGERS--RASHTTLTTRDGHQTANHPLTAA 78
PSC+T GERS HT D TANH T +
Sbjct: 222 PSCSTSAAGERSGPNPDHTAAGAGDS-ATANHNNTTS 257
>01_01_0974 +
7678211-7678276,7678974-7679063,7679144-7679255,
7679959-7679986,7680163-7680261,7680614-7680683,
7680765-7680799,7680895-7680969,7681054-7681149,
7681376-7681439,7682273-7682358,7682800-7682860,
7682956-7683020,7683255-7683360,7684142-7684230,
7684353-7684515
Length = 434
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 100 RTTH*PQPVYK*RNARATTIATDN 29
R H P+P+YK N R T I +N
Sbjct: 381 RHRHLPKPIYKAANLRRTMIEAEN 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,458,673
Number of Sequences: 37544
Number of extensions: 189209
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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