Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O18
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-3|CAA93266.1|  442|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z69302-3|CAA93266.1|  442|Caenorhabditis elegans Hypothetical
           protein F40F8.8 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 200 SRRRSVPSCATPCFGERSRASHTTLTTRDGHQTANHPLTA 81
           SRRRS+   + PC   R  +    L   +G  +   PL A
Sbjct: 403 SRRRSILVASNPCLAMRDESMDEKLMMTNGCNSEGDPLVA 442


>Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical
           protein R74.7 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 296 DVYLQICQQCSGRLVSCLRCSRAPDRFQSITRSRRRSVPSCATP 165
           D+Y ++ ++   R  S  +  +  D FQ + +  RR+V  CA P
Sbjct: 10  DIYYRLAKENKWRARSAFKLMQIDDEFQIL-KGVRRAVDLCAAP 52


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 278 CQ-QCSGRLVSCLRCSRAPDRFQSITRSRRRSVPSCATPCFGERSRASHTTLTTRDGHQT 102
           CQ QC   L SCL     P     + +   +  P+C   C  E +  + TT TT+   + 
Sbjct: 406 CQPQC---LQSCLEQHIQPQVVTQLPQCIPQCQPACEPQCIQETTTTT-TTTTTQSPQKP 461

Query: 101 ANHPLTAAGVQV 66
               +T  G QV
Sbjct: 462 PIIKITVTGQQV 473


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 209 ITRSRRRSVPSCATPCFGERSRASHTTLTTRDGHQTANHPLT 84
           ++  R +S+P    P  G  S +S  T+ TR  + ++  PLT
Sbjct: 252 VSSFREKSIPLEEAPRLGSASSSSICTVDTRPSNVSSLPPLT 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,482,365
Number of Sequences: 27780
Number of extensions: 138811
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)