Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O18
(359 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 1.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 1.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 1.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 3.3
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 3.3
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 3.3
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 3.3
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 3.3
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 7.7
AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein. 20 7.7
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 1.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 299 TDVYLQICQQCSGRLVSCLRCSRAPDRFQSITRSRRR 189
TD++L + SG L A + QS+ SRR+
Sbjct: 351 TDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQ 387
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 1.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 299 TDVYLQICQQCSGRLVSCLRCSRAPDRFQSITRSRRR 189
TD++L + SG L A + QS+ SRR+
Sbjct: 319 TDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQ 355
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 1.9
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +3
Query: 282 LQINVGIQVMLTSIWFSSKYILYR 353
+++N+ QVM T++W ++ Y+
Sbjct: 71 IEMNLKNQVMTTNVWVEQRWNDYK 94
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = +3
Query: 282 LQINVGIQVMLTSIWFSSKYILYR 353
+ +N+ Q+M T++W + Y+
Sbjct: 66 IDVNLKNQIMTTNLWVEQSWYDYK 89
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = +3
Query: 282 LQINVGIQVMLTSIWFSSKYILYR 353
+ +N+ Q+M T++W + Y+
Sbjct: 66 IDVNLKNQIMTTNLWVEQSWYDYK 89
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 3.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = +3
Query: 282 LQINVGIQVMLTSIWFSSKYILYR 353
+ +N+ Q+M T++W + Y+
Sbjct: 62 IDVNLKNQIMTTNLWVEQSWYDYK 85
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 3.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = +3
Query: 282 LQINVGIQVMLTSIWFSSKYILYR 353
+ +N+ Q+M T++W ++ Y+
Sbjct: 58 IDVNLKNQIMTTNVWVEQEWNDYK 81
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 3.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 284 QICQQCSGRLVS 249
++CQQC G L S
Sbjct: 543 KLCQQCVGNLAS 554
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 3.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 284 QICQQCSGRLVS 249
++CQQC G L S
Sbjct: 543 KLCQQCVGNLAS 554
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 3.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 284 QICQQCSGRLVS 249
++CQQC G L S
Sbjct: 543 KLCQQCVGNLAS 554
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 7.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 85 VSGWFAVWCPSRVVS 129
+S WF W P V++
Sbjct: 284 ISLWFMAWTPYLVIN 298
>AB178034-1|BAD27112.1| 76|Apis mellifera apiceropsin protein.
Length = 76
Score = 20.2 bits (40), Expect = 7.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 85 VSGWFAVWCPSRVVS 129
+S WF W P V++
Sbjct: 34 ISLWFMAWTPYLVIN 48
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,956
Number of Sequences: 438
Number of extensions: 1644
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8432340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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