Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O17
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.82 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   4.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 416 RSRYPRRVNRFQCSPEWKRTVSSSPSHRPCVV 321
           RS    RV    CSP ++  + S+P   P +V
Sbjct: 41  RSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 271 KLLHEVVDHAVVEVLSSQMRVAGGRLHFEYTILDGQDGHIE-GAAAEVKDEYVSFSS 104
           +L  EV+  A V +L    R  G  L    T LDG +  ++  + +E + E+V  ++
Sbjct: 142 QLGQEVIYTACVGLLERAFRCLGNNLTAFLTTLDGVNDVVQHQSGSEAEAEFVCIAT 198


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 416 RSRYPRRVNRFQCSPEWKRTVSSSPSHRPCVVA*AP 309
           RSR  R   RF  S   +R+ SSS S  P ++   P
Sbjct: 18  RSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQP 53


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 157 HIEGAAAEVKDEYVSFSSTLLVKAVRN 77
           H  G+   VKDEY+   S  + K V +
Sbjct: 363 HFVGSNKPVKDEYMLVLSNRMQKIVND 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 35  LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDV 157
           LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 787 LNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 231 TSTTAWSTTSCRSLRGN 281
           TSTT   T SCR  R N
Sbjct: 91  TSTTTSVTPSCRRQRYN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,619
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)