Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O16
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   2.2  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    24   2.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   2.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   3.8  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    23   5.1  
SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subu...    23   6.7  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    23   8.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    23   8.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   8.8  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 130  NYQVYRAKDFCLRFVIPEPWIRVKGLNKI*TKLLQ 234
            +Y  +  KD+CL   +PE +++++ L +  +K+LQ
Sbjct: 1344 SYNYHVLKDWCLESGVPEAYLQLEELLQT-SKILQ 1377


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 86  IYIHKRSLFHSEVYLIIKYIERRI 157
           +Y++ + +FH  +Y  + Y+  R+
Sbjct: 228 MYVYDKWIFHIPLYFTVDYVSERL 251


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 77  YKNIY--IHKRSLFHSEVYLIIKYIERRIFVYVLS 175
           Y N Y  +H R  F + VY IIK    R   + LS
Sbjct: 637 YDNYYSFVHNRGRFATYVYFIIKDCVLRTLAHKLS 671


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 215  ILFNPFTRIHGS 180
            +LFNPFT++ GS
Sbjct: 1929 LLFNPFTQVDGS 1940


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 83  NIYIHKRSLFHSEVYLIIKYIERRIFVYVLSYQNHGFV*RG 205
           NI  HK     +  Y+I  Y +RR+F+    +   G V RG
Sbjct: 320 NIVFHKHKKVCT-YYMIRHYAKRRLFITPTWWLRSGSVFRG 359


>SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subunit
           Rpc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 129

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 173 TKRKQKSFALYT**LDILHYEITTSCECKYFCKEITKKTFLLVIXRYSPFTLNPPDI 3
           T+ +  + AL    L  + +EI      +  C+ +TK+ FL  I  ++ F L   +I
Sbjct: 31  TQERGAAQALVCENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEI 87


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 TFCHTRTMDSCEGVEQDLDKAITKLNNLNE 254
           T+ H  T+D    V   +DKA++ L   NE
Sbjct: 368 TWLHGCTLDGVSVVVDSVDKALSLLLEWNE 397


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 88  NIFVRKLQKKHFSSLLXGIVRSLLT 14
           ++ VRKL K   SSLL   ++ L T
Sbjct: 245 SVIVRKLTKSPESSLLSAFIKFLET 269


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 192  NPWFWYD 172
            NPWFW++
Sbjct: 1204 NPWFWFE 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,088,077
Number of Sequences: 5004
Number of extensions: 19288
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)