Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O16
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    25   6.3  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    25   8.4  

>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 229 IALSKSCSTPSHESMVLV*QNVNKNPS 149
           I LSKS STP+   +VL  QN  + PS
Sbjct: 157 IQLSKSSSTPAFSYIVL--QNTGRKPS 181


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 24  ERTIPXNNEEKCFFCNFLT 80
           ERT P N +EKC   NF++
Sbjct: 828 ERTPPKNGQEKCNCRNFIS 846


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,511
Number of Sequences: 37544
Number of extensions: 93507
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)