Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O16
         (260 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U91328-3|AAB82084.1|  465|Homo sapiens unknown protein.                28   6.2  
U90547-1|AAB53425.1|  465|Homo sapiens Ro/SSA ribonucleoprotein ...    28   6.2  
BC026930-1|AAH26930.1|  465|Homo sapiens tripartite motif-contai...    28   6.2  

>U91328-3|AAB82084.1|  465|Homo sapiens unknown protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 174 HTRTM--DSCEGVEQDLDKAITKLNNLNE 254
           HT  +  D C+G ++ L KA+TKL  L +
Sbjct: 124 HTTALVEDVCQGYKEKLQKAVTKLKQLED 152


>U90547-1|AAB53425.1|  465|Homo sapiens Ro/SSA ribonucleoprotein
           homolog protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 174 HTRTM--DSCEGVEQDLDKAITKLNNLNE 254
           HT  +  D C+G ++ L KA+TKL  L +
Sbjct: 124 HTTALVEDVCQGYKEKLQKAVTKLKQLED 152


>BC026930-1|AAH26930.1|  465|Homo sapiens tripartite
           motif-containing 38 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 174 HTRTM--DSCEGVEQDLDKAITKLNNLNE 254
           HT  +  D C+G ++ L KA+TKL  L +
Sbjct: 124 HTTALVEDVCQGYKEKLQKAVTKLKQLED 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,957,993
Number of Sequences: 237096
Number of extensions: 608105
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 76,859,062
effective HSP length: 64
effective length of database: 61,684,918
effective search space used: 1357068196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)