Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O16
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 100 LVNVNIFVRKLQK 62
           +V VNIFVR + K
Sbjct: 60  VVRVNIFVRSISK 72


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 SSI*SEGFLFTFCHTRTMDSCEGVEQDLDKAITKLNNLN 251
           SSI  E  LF    T  ++   GV +     +TK  N N
Sbjct: 808 SSIDKENILFLDLSTGKVEMITGVGKATSPNLTKWGNPN 846


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 27  RTIPXNNEEKCFFCNFLTK 83
           RT+   N E CF   F  K
Sbjct: 535 RTLGNQNSEMCFSLKFKNK 553


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +3

Query: 150 EGFLFTFCHTRTMDSCE 200
           E   F  CH    D+C+
Sbjct: 740 EAHCFALCHCCDFDACD 756


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,383
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)