Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_O15
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   3.1  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    24   5.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   5.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   7.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    23   7.1  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    23   9.3  

>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 68  ASGSNYRPPKKSKCNGGGCGR 130
           A+G N  P   + CN GGC R
Sbjct: 234 ATGYNGTPRGATNCNEGGCPR 254


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 50  LPLSGGASGSNYRPPKKS 103
           LP+ GG  GS++ P  KS
Sbjct: 107 LPMGGGKGGSDFDPKGKS 124


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 275 VSNSKYIDYTPQRYLIFTRTHK*XSND 195
           +   ++IDYTP        +HK   ND
Sbjct: 3   IHRCRFIDYTPSAITAMAFSHKSGQND 29


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 97  EVQVQWRRLRPLGLCPRTQPLPYTHITWRNKXKSFXXYLCVRVN 228
           E +  ++ L  + LCP    L   H + RNK  S   ++  R+N
Sbjct: 20  ESEDSFQSLVSVFLCPILLKLDSPHESVRNKTISIANHIMTRLN 63


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 113 HCTWTSWAGGSLIRKRHHSAVSNHCQQ 33
           HCTW  +   S+I  R    V NH +Q
Sbjct: 227 HCTWEPYNNISMI--RGSKKVDNHIKQ 251


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 287 PSPLVSNSKYID 252
           PSP ++NS+Y+D
Sbjct: 198 PSPCITNSRYMD 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,756
Number of Sequences: 5004
Number of extensions: 21594
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)