Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_O15
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-10|AAB71320.2| 971|Caenorhabditis elegans Hypothetical... 29 0.76
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 28 1.0
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 28 1.3
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 26 5.4
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 26 5.4
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 26 5.4
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 26 5.4
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 26 5.4
U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical ... 25 7.1
AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical ... 25 7.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 23 7.4
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 25 9.4
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 25 9.4
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 25 9.4
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 25 9.4
AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical ... 25 9.4
>AF026215-10|AAB71320.2| 971|Caenorhabditis elegans Hypothetical
protein F09G2.1 protein.
Length = 971
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 152 CVRGQSPSGRSLRHCTWTSWAGGSLIRKRHHSAVSNHCQQQSRLVPN 12
C+ P R TW S A G R +S ++ C+ ++ +PN
Sbjct: 858 CIDDHPPYVTRNRSVTWRSKANGEAKLGREYSMTTHVCEDETHQLPN 904
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 AADNDYLPLSGGASGSNYR--PPKKSKCNGGGCG 127
AA D P GG G Y PP GG CG
Sbjct: 85 AAYKDAAPAGGGGGGEKYSEAPPVIEAAGGGSCG 118
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 56 LSGGASGSNYRPPKKSKCNGGGCGR*GSVPVRNHY 160
L GG G PP C GGGCG G P Y
Sbjct: 20 LLGGGGGGCCAPPPPPPC-GGGCG--GGAPAAGGY 51
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 56 LSGGASGSNYRPPKKSK-CNGGG 121
+ GGA+G+ + P K+ K C GGG
Sbjct: 681 VGGGATGAQFDPLKEQKSCRGGG 703
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 62 GGASGSNYRPPKKSKCNGGGCG 127
GG G PP GGGCG
Sbjct: 45 GGGCGGGCAPPPPPPACGGGCG 66
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 62 GGASGSNYRPPKKSKCNGGGCG 127
GG G PP GGGCG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCG 123
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 20 RGGTAADNDYLPLSGGASGSNYRPPKKSKCNGGGCGR*G 136
RGG + Y +GG SG YR S GGG GR G
Sbjct: 294 RGGDRGGSRYS--TGGGSGGGYRSGGGSS-GGGGGGRYG 329
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 94 QEVQVQWRRLRPLGLCPRTQPLPYTHIT 177
Q+ Q Q + RP+ L PR P P H T
Sbjct: 385 QQFQHQHHQHRPIMLAPRHHPPPPPHFT 412
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 94 QEVQVQWRRLRPLGLCPRTQPLPYTHIT 177
Q+ Q Q + RP+ L PR P P H T
Sbjct: 422 QQFQHQHHQHRPIMLAPRHHPPPPPHFT 449
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 94 QEVQVQWRRLRPLGLCPRTQPLPYTHIT 177
Q+ Q Q + RP+ L PR P P H T
Sbjct: 422 QQFQHQHHQHRPIMLAPRHHPPPPPHFT 449
>U10401-5|AAA19060.1| 238|Caenorhabditis elegans Hypothetical
protein T20B12.7 protein.
Length = 238
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 2 GWKYSARGGTAADNDYLPLSGGASGSNYRPPKKSKCNGGGCG 127
G K + G AD D + G ++ P + GGCG
Sbjct: 123 GEKVALDLGVVADEDLIDEDGLLQEEDFEKPTGDQLKAGGCG 164
>AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical
protein C10F3.4a protein.
Length = 458
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 284 SPLVSNSKYIDYTPQRYLIFTRTHK 210
SP S++ Y +Y+P +++ R+H+
Sbjct: 29 SPSASSAPYFNYSPDDFILDLRSHQ 53
>AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical
protein C10F3.4b protein.
Length = 482
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 284 SPLVSNSKYIDYTPQRYLIFTRTHK 210
SP S++ Y +Y+P +++ R+H+
Sbjct: 53 SPSASSAPYFNYSPDDFILDLRSHQ 77
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 126 PQPPPLHLDFLGGR*FDPEAPPLSG 52
P PPPL + G P PP+ G
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLG 587
Score = 21.0 bits (42), Expect(2) = 7.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 147 TGTEP*RPQPPPL 109
T +P RP PPP+
Sbjct: 526 TSKDPPRPAPPPV 538
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 23 GGTAADNDYLPLSGGASGSNYRP 91
GGT D+ P + A GSN +P
Sbjct: 29 GGTIETEDFNPFANRAGGSNAQP 51
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 62 GGASGSNYRPPKKSKCNGGGCG 127
GG G PP C G GCG
Sbjct: 37 GGGGGCCAPPPPPPVCGGCGCG 58
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 32 AADNDYLPLSGGASGSNYRPPKKSKCNGGG 121
AA + +L SGG G PP C GG
Sbjct: 12 AATSAFLFPSGGGGGCGCAPPPPPACGCGG 41
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp
(synaptic vesicle protein)homolog protein 1 protein.
Length = 335
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 23 GGTAADNDYLPLSGGASGSNYRP 91
GGT D+ P + A GSN +P
Sbjct: 29 GGTIETEDFNPFANRAGGSNAQP 51
>AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical
protein Y102A11A.6 protein.
Length = 286
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 261 VHRLYSSTLLNIYTYT 214
VH YS T+LN Y YT
Sbjct: 191 VHEDYSGTILNSYQYT 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,926,895
Number of Sequences: 27780
Number of extensions: 139792
Number of successful extensions: 321
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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